CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH50009

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	KRH10835	AT4G21670.1	18541146
AT3G54290.1	KRH20483	AT4G21670.1	18541146
AT3G54290.1	KRH21480	AT4G21670.1	18541146
AT3G54290.1	KRH50009	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36010	Soybean	cytosol	92.42	93.27
KRH33267	Soybean	cytosol	66.06	63.37
VIT_13s0101g00520.t01	Wine grape	cytosol	50.91	61.54
PGSC0003DMT400061575	Potato	cytosol	54.24	54.91
Solyc11g006830.1.1	Tomato	cytosol	53.94	54.6
CDY13198	Canola	plastid	45.15	51.56
AT3G54290.1	Thale cress	plastid	54.24	51.14
Bra014824.1-P	Field mustard	plastid	50.3	50.92
CDX76154	Canola	plastid	50.3	50.92
CDX73491	Canola	plastid	50.91	46.28
Bra007062.1-P	Field mustard	plastid	50.3	45.73
CDX78227	Canola	cytosol, plastid	50.0	45.21
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	38.48	37.13
Zm00001d012290_P001	Maize	cytosol	19.7	30.81
TraesCS3A01G374300.1	Wheat	mitochondrion	23.03	30.4
Os01t0861700-00	Rice	plasma membrane	35.15	28.57
Zm00001d042764_P001	Maize	plastid	33.94	27.93
EES01796	Sorghum	mitochondrion, plastid	33.94	27.86
HORVU3Hr1G084020.2	Barley	plastid	32.42	26.29

Protein Annotations

EMBL:ACUP02012636	EnsemblPlants:KRG90752	EnsemblPlantsGene:GLYMA_20G111300	EntrezGene:100807364	Gene3D:1.20.120.520	InterPro:Haemerythrin-like
PANTHER:PTHR35739	PFAM:PF01814	ProteinID:KRG90752	ProteinID:KRG90752.1	UniParc:UPI000233DB8F	UniProt:I1NFE3
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:35343037..35345153

Molecular Weight (calculated)

36704.5 Da

IEP (calculated)

6.445

GRAVY (calculated)

-0.282

Length

330 amino acids

Sequence
(BLAST)

001: MGNCLGKSEK LTAEIVPRDG AKVYPTVRLH GSPKSILAAY IRFALLHKSV SLDFVETETV RVGGSEPEGG AVTLQVGSEV VSGSRETLLR FIDARFPGPS
101: LGSGSGRDDE TTPLLASLTR VHHTSMLWHV ERMVKWAEDL TTRGGKKIVD PSVGTPRMEI RKFGRSYSEL LELMMEHAQM EETILFPLFD KADRGLAKAA
201: KEEHARDLPL MNGIKEVIKS VGVLDSGSPD YHEALYSLSS RLKSLQGQCK QHFAEEEVEL LPLMEALELS KEQEVSALEQ CFDVMQGTHG RLLKFLLEGL
301: PPHDAMKYLD LISKCRDKEK MESMLQKIVK

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.