Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G084020.2 | Barley | plastid | 98.4 | 60.44 |
| Os01t0861700-00 | Rice | plasma membrane | 90.8 | 55.91 |
| Zm00001d042764_P001 | Maize | plastid | 89.6 | 55.86 |
| EES01796 | Sorghum | mitochondrion, plastid | 89.6 | 55.72 |
| Zm00001d012290_P001 | Maize | cytosol | 29.2 | 34.6 |
| GSMUA_Achr3P22630_001 | Banana | mitochondrion, plastid | 44.4 | 32.46 |
| VIT_13s0101g00520.t01 | Wine grape | cytosol | 33.2 | 30.4 |
| PGSC0003DMT400061575 | Potato | cytosol | 34.4 | 26.38 |
| Solyc11g006830.1.1 | Tomato | cytosol | 34.4 | 26.38 |
| AT3G54290.1 | Thale cress | plastid | 34.0 | 24.29 |
| CDX76154 | Canola | plastid | 31.6 | 24.23 |
| Bra014824.1-P | Field mustard | plastid | 31.6 | 24.23 |
| KRH33267 | Soybean | cytosol | 33.2 | 24.13 |
| KRG90752 | Soybean | cytosol | 30.4 | 23.03 |
| KRH36010 | Soybean | cytosol | 30.0 | 22.94 |
| CDY13198 | Canola | plastid | 24.8 | 21.45 |
| CDX78227 | Canola | cytosol, plastid | 30.4 | 20.82 |
| Bra007062.1-P | Field mustard | plastid | 30.0 | 20.66 |
| CDX73491 | Canola | plastid | 29.6 | 20.39 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G374300.1 | EnsemblPlantsGene:TraesCS3A01G374300 | Gene3D:1.20.120.520 | InterPro:Haemerythrin-like | PANTHER:PTHR35739 | PFAM:PF01814 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:623935757..623938816
Molecular Weight (calculated)
28560.9 Da
IEP (calculated)
8.820
GRAVY (calculated)
-0.477
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRLQHRSAE RHLEGVAAKL AEMVKKGAKK AGKGRSVAVE GAEVRRLGKW YGDAMEVMLE HARMEERVLF PDIQRASFPG VCDKVQEQHG KHLPMMNGIK
101: EDIKTLLTLE LGSALFYEVL VNLSVRLKAL QDHTKEHFKE EEKDMLPRLE SVRRMQREEG NVPDKSNSGW ASEAMGTMEM THSKLFPFFM TGLMPQEAVQ
201: YLDLVCRCTK NTRHLVSMLR SLAERLEDAN PSIIHNNPTR LYEHLLVKSP
101: EDIKTLLTLE LGSALFYEVL VNLSVRLKAL QDHTKEHFKE EEKDMLPRLE SVRRMQREEG NVPDKSNSGW ASEAMGTMEM THSKLFPFFM TGLMPQEAVQ
201: YLDLVCRCTK NTRHLVSMLR SLAERLEDAN PSIIHNNPTR LYEHLLVKSP
001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD
Arabidopsis Description
At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.