Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21480 | Soybean | nucleus | 92.9 | 92.71 |
| Zm00001d029743_P001 | Maize | cytosol | 9.29 | 77.39 |
| KRH50009 | Soybean | nucleus | 77.04 | 77.2 |
| KRH20483 | Soybean | nucleus | 76.51 | 76.35 |
| GSMUA_Achr11P... | Banana | cytosol | 2.92 | 71.79 |
| PGSC0003DMT400057635 | Potato | nucleus | 58.66 | 63.79 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 52.09 | 63.32 |
| Solyc02g078550.2.1 | Tomato | nucleus | 62.73 | 63.0 |
| AT4G21670.1 | Thale cress | nucleus | 58.66 | 58.12 |
| CDX94046 | Canola | nucleus | 57.1 | 57.52 |
| Bra020905.1-P | Field mustard | cytosol | 50.73 | 57.38 |
| CDX76438 | Canola | cytosol | 50.42 | 57.02 |
| Bra038764.1-P | Field mustard | nucleus | 56.16 | 56.81 |
| CDY31421 | Canola | cytosol | 49.69 | 56.8 |
| CDX98696 | Canola | nucleus | 54.8 | 56.33 |
| GSMUA_Achr11P... | Banana | nucleus | 53.86 | 55.66 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 54.91 | 55.43 |
| CDX79083 | Canola | nucleus | 48.96 | 54.6 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 52.61 | 54.08 |
| EES05486 | Sorghum | cytosol | 52.51 | 53.85 |
| GSMUA_Achr11P... | Banana | extracellular | 10.23 | 53.55 |
| Os02t0639000-01 | Rice | cytosol | 52.3 | 53.3 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 52.09 | 53.03 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 52.09 | 52.97 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 51.98 | 52.87 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 51.46 | 52.0 |
| Os04t0529500-02 | Rice | extracellular | 50.63 | 51.98 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 48.33 | 51.96 |
| Bra013546.1-P | Field mustard | nucleus | 47.29 | 51.59 |
| KXG26770 | Sorghum | nucleus | 50.63 | 51.49 |
| Zm00001d017373_P001 | Maize | nucleus | 51.46 | 51.25 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 50.52 | 51.05 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 50.42 | 50.9 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 49.58 | 50.69 |
| KRH49327 | Soybean | nucleus | 38.52 | 43.98 |
| KRH00194 | Soybean | nucleus | 38.2 | 43.42 |
Protein Annotations
| EntrezGene:100816525 | MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | UniProt:A0A0R0G5G3 | EMBL:ACUP02009160 |
| InterPro:FCP1_dom | EnsemblPlantsGene:GLYMA_15G072000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0070940 | InterPro:HAD-like_sf |
| InterPro:IPR004274 | InterPro:IPR014720 | EnsemblPlants:KRH10835 | ProteinID:KRH10835 | ProteinID:KRH10835.1 | PFAM:PF00035 |
| PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SMART:SM00358 |
| SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI000233BE45 | InterPro:dsRBD_dom | SEG:seg |
Description
hypothetical protein
Coordinates
chr15:+:5506398..5515252
Molecular Weight (calculated)
107404.0 Da
IEP (calculated)
6.951
GRAVY (calculated)
-0.450
Length
958 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSMVYHGE MEVGEVEIYP EEKKNIDLKE IRISHFSQPS ERCPPLAVLH TITSFGICFK MESSTSQTRQ QQDVLFHLHS SCIRENKTAV MPLRGEEIHL
101: VAMYSRNNDR PCFWGFIVAS GLYNSCLTML NLRCLGIVFD LDETLVVANT MRSFEDKIEV LHRKMNSEVN PQRISTMQAE IKRYLDDKNI LKEYAENDQV
201: VDNGKVIKIQ SEIVPALSDS HQPIVRPLIR LQEKNIILTR INPQIRDTSV LVRLRPAWED LRSYLTARGR KRFEVFVCTM AERDYALEMW RLLDPELNLI
301: NSKELLDRIV CVKSGLKKSL FNVFQNGLCH LKMALVIDDR LKVWDEKDQP QVHVVPAFAP YYAPQAEASN AVPTLCLARS VACNVRGGFF KDFDDGLLQK
401: IPLIAYEDDI KDIPSPPDVS NYLVSEDDAS ASNGNKNLLL FDGMADAEVE RRLKDAISAS STVPAMTTNL DPRLAFNSSL QYTMVSSSGT VPPPTAQASI
501: VQFGNVQFPQ PNTLVKPICQ VTPPGPSLHS SPAREEGEVP ESELDLDTRR RLLILQHGQD TREHTSSEPP LPVRHPTQVS APSVPSRRGW FSVEEEMGPQ
601: QLNQLVPKEF PVGSEPLHIE KRWPRHPSLF SKVDDSVSSD RVFHESHQRL PKEVHHRDDH SRLSQSLSSY HSFPGDDIPL SGSSYSNRDF DSESGRSLFH
701: ADITAGVLQE IALKCGTKVE FLSSLVASTA LQFSIEAWFA GKKVGEGFGR TRREAQNKAA ECSIKQLADI YMSHAKDDSG STYGDVSGFH GSNNNGFVSS
801: GNSLGNQLLP KESVSFSTSS DSSRVSDPRL EVSKRSTDSI SALKEFCMME GLAANFQSSP APASTHFAQK DEVHAQVEID GQIFGKGFGL TWEEAKMQAA
901: KKALESLRTM FNQGTRKRHG SPRSMQGLAN KRLKQEYPRT LQRIPYSARY PRNAPLVP
101: VAMYSRNNDR PCFWGFIVAS GLYNSCLTML NLRCLGIVFD LDETLVVANT MRSFEDKIEV LHRKMNSEVN PQRISTMQAE IKRYLDDKNI LKEYAENDQV
201: VDNGKVIKIQ SEIVPALSDS HQPIVRPLIR LQEKNIILTR INPQIRDTSV LVRLRPAWED LRSYLTARGR KRFEVFVCTM AERDYALEMW RLLDPELNLI
301: NSKELLDRIV CVKSGLKKSL FNVFQNGLCH LKMALVIDDR LKVWDEKDQP QVHVVPAFAP YYAPQAEASN AVPTLCLARS VACNVRGGFF KDFDDGLLQK
401: IPLIAYEDDI KDIPSPPDVS NYLVSEDDAS ASNGNKNLLL FDGMADAEVE RRLKDAISAS STVPAMTTNL DPRLAFNSSL QYTMVSSSGT VPPPTAQASI
501: VQFGNVQFPQ PNTLVKPICQ VTPPGPSLHS SPAREEGEVP ESELDLDTRR RLLILQHGQD TREHTSSEPP LPVRHPTQVS APSVPSRRGW FSVEEEMGPQ
601: QLNQLVPKEF PVGSEPLHIE KRWPRHPSLF SKVDDSVSSD RVFHESHQRL PKEVHHRDDH SRLSQSLSSY HSFPGDDIPL SGSSYSNRDF DSESGRSLFH
701: ADITAGVLQE IALKCGTKVE FLSSLVASTA LQFSIEAWFA GKKVGEGFGR TRREAQNKAA ECSIKQLADI YMSHAKDDSG STYGDVSGFH GSNNNGFVSS
801: GNSLGNQLLP KESVSFSTSS DSSRVSDPRL EVSKRSTDSI SALKEFCMME GLAANFQSSP APASTHFAQK DEVHAQVEID GQIFGKGFGL TWEEAKMQAA
901: KKALESLRTM FNQGTRKRHG SPRSMQGLAN KRLKQEYPRT LQRIPYSARY PRNAPLVP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.