CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97189
KRH06008
KRH10835
KRH17522
KRH20483
KRH21480
KRH31595
KRH50009
KRH51611
KRH60933
KRH68916

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	KRH06008	AT1G20630.1	21798944
AT3G49250.1	KRH17522	AT1G20630.1	21798944
AT3G49250.1	KRH51611	AT1G20630.1	21798944
AT3G49250.1	KRH60933	AT1G20630.1	21798944
AT3G49250.1	KRG97189	AT3G61790.1	21798944
AT3G49250.1	KRH68916	AT3G61790.1	21798944
AT3G49250.1	KRH10835	AT4G21670.1	18541146
AT3G49250.1	KRH20483	AT4G21670.1	18541146
AT3G49250.1	KRH21480	AT4G21670.1	18541146
AT3G49250.1	KRH50009	AT4G21670.1	18541146
AT3G49250.1	KRH31595	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64437	Soybean	cytosol, nucleus	74.02	69.27
Solyc03g071800.1.1	Tomato	cytosol	22.79	57.41
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	9.56	54.17
Solyc03g071820.1.1	Tomato	cytosol	20.1	53.95
VIT_16s0098g01820.t01	Wine grape	cytosol	50.25	47.56
KRG97196	Soybean	cytosol	33.58	45.21
GSMUA_Achr10P...	Banana	cytosol	36.52	43.7
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	14.46	42.14
AT3G49250.1	Thale cress	cytosol	42.4	41.19
Bra019588.1-P	Field mustard	cytosol	37.01	39.22
CDY08119	Canola	cytosol, plastid	40.2	38.86
CDY05915	Canola	cytosol	39.95	38.81
Solyc03g083210.2.1	Tomato	cytosol, nucleus	41.18	38.44
CDY00194	Canola	cytosol	37.75	38.12
CDX86984	Canola	cytosol	37.5	38.06
Bra017998.1-P	Field mustard	cytosol	39.95	37.73
Zm00001d013511_P001	Maize	cytosol	26.47	37.5
Solyc06g051990.2.1	Tomato	cytosol	42.89	37.47
Solyc03g071790.1.1	Tomato	cytosol	21.08	36.91
KXG31464	Sorghum	cytosol	35.54	35.8
Os01t0235200-02	Rice	cytosol	35.54	34.69
Zm00001d053353_P001	Maize	cytosol	21.32	32.58
TraesCS3B01G185200.1	Wheat	cytosol	33.33	29.82
TraesCS3A01G158200.1	Wheat	cytosol	33.09	29.61
TraesCS3D01G165900.1	Wheat	cytosol	33.09	29.61
HORVU3Hr1G057390.1	Barley	cytosol	34.31	29.23
Solyc03g083170.2.1	Tomato	cytosol	40.69	21.34
Zm00001d050870_P001	Maize	cytosol	10.29	20.9
KRH03942	Soybean	cytosol	23.77	8.31

Protein Annotations

EMBL:ACUP02003469	EnsemblPlants:KRH53504	EnsemblPlantsGene:GLYMA_06G129200	ncoils:Coil	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1
ProteinID:KRH53504	ProteinID:KRH53504.1	SEG:seg	UniParc:UPI0006EE17E3	UniProt:A0A0R0JGH5	MapMan:12.5.1.14.2

Description

hypothetical protein

Coordinates

chr6:-:10617606..10621357

Molecular Weight (calculated)

44988.1 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.212

Length

408 amino acids

Sequence
(BLAST)

001: MANTIVDPNT AAATAQHQRR QSLCRKKKAQ TKLKTKASPQ FFLSLLPIKV PTTIESHVDL HSIAGIDSQT HSLHTNPLSI QGASSALVPV DLNEGTVDAK
101: ENVQNGEMLH IQSSFRHSQK LEDDLRMLGT KIKQHENNLY HLNSEKSKLD DSILHLQVTI GKSDSSSKAT IGDMDNPNPT NDEEVNKQIL QHEKSAAGIL
201: CQLRIHHGAQ ASHLTLTKDV VGIVATLGKV EDDILSRLFS EYLGVETMLA IVCRTYEEVK ALEMYDKEGC INKSFDLRRL GASIGRALDG RFLVICLEYL
301: RPYAGNYMLE DAQRKLDILI PRLPNGELPS GFLGYAVTMI NLDSSNLFCV TPSGYGLRET LFYNLFSCLQ VYKTRAKMIQ ALPCISEGAL SLDGGMVRSC
401: GVFSLGNS

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.