Factsheet for Bra017998.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003473.1-P
Bra012239.1-P
Bra013546.1-P
Bra014069.1-P
Bra014421.1-P
Bra017699.1-P
Bra017700.1-P
Bra020905.1-P
Bra025833.1-P
Bra032216.1-P
Bra034677.1-P
Bra034678.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	Bra012239.1-P	AT1G20630.1	21798944
AT3G49250.1	Bra025833.1-P	AT1G20630.1	21798944
AT3G49250.1	Bra014069.1-P	AT1G47260.1	21798944
AT3G49250.1	Bra032216.1-P	AT1G47260.1	21798944
AT3G49250.1	Bra003473.1-P	AT3G61790.1	21798944
AT3G49250.1	Bra014421.1-P	AT3G61790.1	21798944
AT3G49250.1	Bra013546.1-P	AT4G21670.1	18541146
AT3G49250.1	Bra020905.1-P	AT4G21670.1	18541146
AT3G49250.1	Bra038764.1-P	AT4G21670.1	18541146
AT3G49250.1	Bra017699.1-P	AT4G35160.1	21798944
AT3G49250.1	Bra017700.1-P	AT4G35160.1	21798944
AT3G49250.1	Bra034677.1-P	AT4G35160.1	21798944
AT3G49250.1	Bra034678.1-P	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08119	Canola	cytosol, plastid	87.73	89.81
Bra019588.1-P	Field mustard	cytosol	66.2	74.29
AT3G49250.1	Thale cress	cytosol	68.29	70.24
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	9.49	56.94
Solyc03g071800.1.1	Tomato	cytosol	20.83	55.56
Solyc03g071820.1.1	Tomato	cytosol	17.59	50.0
Solyc03g071790.1.1	Tomato	cytosol	25.69	47.64
GSMUA_Achr10P...	Banana	cytosol	37.27	47.21
VIT_16s0098g01820.t01	Wine grape	cytosol	46.3	46.4
KRH64437	Soybean	cytosol, nucleus	44.68	44.27
Zm00001d013511_P001	Maize	cytosol	28.47	42.71
Zm00001d053353_P001	Maize	cytosol	25.93	41.95
KXG31464	Sorghum	cytosol	38.19	40.74
Solyc03g083210.2.1	Tomato	cytosol, nucleus	40.97	40.5
KRH53504	Soybean	plastid	37.73	39.95
Os01t0235200-02	Rice	cytosol	38.19	39.47
Solyc06g051990.2.1	Tomato	cytosol	40.51	37.47
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	12.04	37.14
TraesCS3B01G185200.1	Wheat	cytosol	38.19	36.18
TraesCS3A01G158200.1	Wheat	cytosol	37.96	35.96
TraesCS3D01G165900.1	Wheat	cytosol	37.96	35.96
HORVU3Hr1G057390.1	Barley	cytosol	38.19	34.45
Zm00001d050870_P001	Maize	cytosol	14.35	30.85
Solyc03g083170.2.1	Tomato	cytosol	39.35	21.85
Bra009745.1-P	Field mustard	nucleus	23.61	6.38
Bra009741.1-P	Field mustard	cytosol	22.92	6.33

Protein Annotations

MapMan:12.5.1.14.2	EnsemblPlantsGene:Bra017998	EnsemblPlants:Bra017998.1	EnsemblPlants:Bra017998.1-P	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005694	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0051276
UniProt:M4DNB1	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1	InterPro:SMC_hinge_sf	SUPFAM:SSF75553	UniParc:UPI000253F223
SEG:seg	:	:	:	:	:

Description

AT3G49250 (E=1e-159) DMS3 | DMS3 (DEFECTIVE IN MERISTEM SILENCING 3)

Coordinates

chrA06:+:9398310..9400138

Molecular Weight (calculated)

47891.3 Da

IEP (calculated)

7.493

GRAVY (calculated)

-0.355

Length

432 amino acids

Sequence
(BLAST)

001: MHPTGQQMSF QNGLFNVQGP STTMQLDPKE TQNGGGMSQA EFALFNSDRL QSDLEAMGNK IKEHEDNLKF LKSQKNKLDE SILKLQVHMG KLHTSGTCTI
101: ENTNLQGEDI NEQILRQVNS AAGVLSYVQS HHYSEALQLD MTNGVVGVVA KLGKVNDQNL SQVLSDYLGT RSMLALVYKD YKSVKPLEKY DNQGNVDRSG
201: AIHGLASSIG RTIEGRFDVI CLENLRPYVG KCIAGDPQRR LDLPNPKLPN GEYPPGFLGY AVNLIQIDPA YLLCVTAYGY GLRETLFYSL FSQLQVYKTR
301: VDMISALPCI TDGAVSLDGG IIRKTGIFTL GSRDVAAANV RFAKPSASQT TGNYSEAERQ MNELRWTKEK TLEDIKRAQV LRDHALYNFG KKKEEFVRCL
401: SQSSCPNEVS VNLLDVTSGF IIVQMNQPKS IL

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.