Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88088 | Canola | cytosol | 99.37 | 98.88 |
| AT5G24280.1 | Thale cress | nucleus, plasma membrane, plastid | 70.92 | 70.96 |
| Bra009741.1-P | Field mustard | cytosol | 59.22 | 60.55 |
| Bra019588.1-P | Field mustard | cytosol | 6.32 | 26.23 |
| Bra017998.1-P | Field mustard | cytosol | 6.38 | 23.61 |
Protein Annotations
| EnsemblPlants:Bra009745.1 | EnsemblPlants:Bra009745.1-P | EnsemblPlantsGene:Bra009745 | Gene3D:3.30.565.10 | GO:GO:0000724 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:HATPase_C_sf |
| InterPro:IPR036890 | ncoils:Coil | PANTHER:PTHR33566 | PANTHER:PTHR33566:SF3 | PFAM:PF13589 | SEG:seg |
| SUPFAM:SSF55874 | UniParc:UPI000253F173 | UniProt:M4CZU8 | MapMan:35.1 | : | : |
Description
AT5G24280 (E=0.0) | EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: DMS3 (DEFECTIVE IN MERISTEM SILENCING 3) (TAIR:AT3G49250.1); Has 61 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Coordinates
chrA06:-:16979004..16987827
Molecular Weight (calculated)
178537.0 Da
IEP (calculated)
6.266
GRAVY (calculated)
-0.367
Length
1599 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSRRLVRRA LILDEDDEDD VVYSFKVLLP NSTSVPLTVI NPEPEMLMGS FVDLVKEEYE KARKSCLLMT KRTRIDWNLG GKFHLESDGE RMKGMVRFAA
0101: FKPYLCHIIR LDDGSGVCSS MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW SCSPGERRLI SVDVSADRIS LFDTGRGMDS SEENAIVKWG
0201: KIGGSLHRSE KTFAIGGKPP YLKPFFGMFG YGGPYACMFL GRRTLVSSKT KESKKVFTLQ YEKEALIGNH SVSGKHWKTG GGMRDPTEDE NKLSPHGSFT
0301: KVEIFESEFD MSKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVEFQVSG EDLAEIAGGE VAITNLNSKG EEFSFQIRFS LTSEKRKGKP QQANARLKFV
0401: YFPIVQGKES IEKILEGLQE EGCKVSESFE TFGRVSIRRL GRLLPEVRWD SIPFMQRGNR ASTLLKSCRR VKCFIDLDAG FNPTPSKTDL ASQNPFSVAL
0501: RNFGSKQTDK EKDTDVKMVI HREGKPLTQL EQNYQDWVMK MHDAHDEEAT SGEDEAILVL ESLDKKALGI LRDAVRVHKV VTRNGKLWKR GQNIKLLKGA
0601: CGGVHNGNIY ATIDYFLIEG FEDEAGGDTR ILCRPIDCPK KEGCKLSCID GSWRLELKKS LTLPITIIDS GKCLHADADE WTRKLERQQE KAPSKIDLLD
0701: ERDCRELNID GELPVSVRVG RAPPQQIVAV IRPASFTSVT PSKKLEQKHV VSMEGKEMVM VVKLADPNTK PSAKVATKSV CSQRVFPTSC KGIGGLYIFS
0801: LRSKFPNLFK RAGTYNFSFS IGDSIRCNKT VVVKPSSKAA KWKLDDSLDP LPWNVRVGSC LGPLRIACFD EYENQIQFTS VPSLEVELKA NPGFQLKIDD
0901: FEANLIDGGS TLMIKEMLVE TDELDKISPS YDATLEIRAQ DTPLCVSTAC KVNPGPLKRI EVNNPQAFEN LLPGSTVENL ILEMFDGFNN HIAEGTSVLI
1001: KTDGYCVEDW MGDNRKVDGH GCIDLSGILK VTEGYGKHVS FSVVSDCKEI FRKESQIEER ELRLVTELPE SCTAGSNLTS LIFKVTDSDG SLDTSIHHDE
1101: KTRCIHTLSV ESDSSSVESG IRYAFVHGSC KVPSLSLPET EGIFSFKVFH SRYPELHVNL EILITPAPTS ERDDIGCSTP YSRMTSTPQS GMASATPFPG
1201: VTPTPSLGLE RTPCSQFGVL AIRSPSLDGS CPSGVMDIVQ YTQSLKQELS TYEAQREVTD ERLKCLEAEQ EQVEQELITF QASLEPQGVA FPECLSTKEQ
1301: MMKHIEEEHY NTAASVFCSL YRKAPPPKSR FLSNKGGKGE VFGIVALLGS VASTSLSRVL SVYLGNDTML ALVCKSSAYG PTSCAEYLKL QSETEYQRLQ
1401: SEAAKLGRSI TNDLLIHCLD AFRPWSSGLM KNDPQRRLAM VNPSLSNGDP IPGFKDYAVN MIELATGELD IQTKLGHGLR ETLFYGLFGD LHVYETGRDL
1501: EAALPFISGS DAVSLDGLIS KRNGLMHSVC LIPEVHFPVT VTENHEKTLV KMEITREKKR KREEEILEER GLLRKIEKKM KKATKKYERF KAMADSQDV
0101: FKPYLCHIIR LDDGSGVCSS MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW SCSPGERRLI SVDVSADRIS LFDTGRGMDS SEENAIVKWG
0201: KIGGSLHRSE KTFAIGGKPP YLKPFFGMFG YGGPYACMFL GRRTLVSSKT KESKKVFTLQ YEKEALIGNH SVSGKHWKTG GGMRDPTEDE NKLSPHGSFT
0301: KVEIFESEFD MSKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVEFQVSG EDLAEIAGGE VAITNLNSKG EEFSFQIRFS LTSEKRKGKP QQANARLKFV
0401: YFPIVQGKES IEKILEGLQE EGCKVSESFE TFGRVSIRRL GRLLPEVRWD SIPFMQRGNR ASTLLKSCRR VKCFIDLDAG FNPTPSKTDL ASQNPFSVAL
0501: RNFGSKQTDK EKDTDVKMVI HREGKPLTQL EQNYQDWVMK MHDAHDEEAT SGEDEAILVL ESLDKKALGI LRDAVRVHKV VTRNGKLWKR GQNIKLLKGA
0601: CGGVHNGNIY ATIDYFLIEG FEDEAGGDTR ILCRPIDCPK KEGCKLSCID GSWRLELKKS LTLPITIIDS GKCLHADADE WTRKLERQQE KAPSKIDLLD
0701: ERDCRELNID GELPVSVRVG RAPPQQIVAV IRPASFTSVT PSKKLEQKHV VSMEGKEMVM VVKLADPNTK PSAKVATKSV CSQRVFPTSC KGIGGLYIFS
0801: LRSKFPNLFK RAGTYNFSFS IGDSIRCNKT VVVKPSSKAA KWKLDDSLDP LPWNVRVGSC LGPLRIACFD EYENQIQFTS VPSLEVELKA NPGFQLKIDD
0901: FEANLIDGGS TLMIKEMLVE TDELDKISPS YDATLEIRAQ DTPLCVSTAC KVNPGPLKRI EVNNPQAFEN LLPGSTVENL ILEMFDGFNN HIAEGTSVLI
1001: KTDGYCVEDW MGDNRKVDGH GCIDLSGILK VTEGYGKHVS FSVVSDCKEI FRKESQIEER ELRLVTELPE SCTAGSNLTS LIFKVTDSDG SLDTSIHHDE
1101: KTRCIHTLSV ESDSSSVESG IRYAFVHGSC KVPSLSLPET EGIFSFKVFH SRYPELHVNL EILITPAPTS ERDDIGCSTP YSRMTSTPQS GMASATPFPG
1201: VTPTPSLGLE RTPCSQFGVL AIRSPSLDGS CPSGVMDIVQ YTQSLKQELS TYEAQREVTD ERLKCLEAEQ EQVEQELITF QASLEPQGVA FPECLSTKEQ
1301: MMKHIEEEHY NTAASVFCSL YRKAPPPKSR FLSNKGGKGE VFGIVALLGS VASTSLSRVL SVYLGNDTML ALVCKSSAYG PTSCAEYLKL QSETEYQRLQ
1401: SEAAKLGRSI TNDLLIHCLD AFRPWSSGLM KNDPQRRLAM VNPSLSNGDP IPGFKDYAVN MIELATGELD IQTKLGHGLR ETLFYGLFGD LHVYETGRDL
1501: EAALPFISGS DAVSLDGLIS KRNGLMHSVC LIPEVHFPVT VTENHEKTLV KMEITREKKR KREEEILEER GLLRKIEKKM KKATKKYERF KAMADSQDV
0001: MSSRRSVKRS LVLDDDDDED IFYNFKVLLP NGTSVKLTLK NPEPEISMQS FVNLVKKEYD NARKDCLLMS KRMKVDWNSG GKFHLESNGG KMKGIVRFAA
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRRTLVSSKT KESKKVFTLQ FKKEALIDNR SIVGKNWKTD GGMRDPSEEE MKLSPHGSFT
0301: KVEIFESEFD ISKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVAFQVNG EDLAEIAGGE VAITNLHSKG QFFSFQIRFT LFGGKRKGTA QEANARLKFV
0401: YFPIVQGKES IEKILQSLEE EGCKVSESFQ TFGRVSLRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFVDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKSTEK EKDDDVNIVI HREGKSVSYA HLEEKYQEWV LEMHNTHDEE AASGLDEAVL IVGSLDKKAL GILRDAVRVH KEVRRKEKTW KRGQNIKILR
0601: GAYAGIHNNN VYATIDYFLI EGFEDEAGGD TRILCRPIDR PENEGCKLSI IDGISKLEVQ SSLSLPITII DSGKCLPVDA NEWNRKLDKQ QEKAPSKIDL
0701: LDERDCRELK IDGELPIGNS VRAGKAPPKQ IVAVVRPACF TSLTPSKKLD QKNIVKMDGE EMVMVVKLKS SDKNISSQRL FPTSRKGISG LYIFSLGSKF
0801: PNLFKKAGTY NFSFSIGNSI KCNKTVVVRP SSKAARWELD DNLESLPCNV RVGSSLPPFR IACFDKYKNK IPFTSVPSLE VELEASPGFL IKIDKLETNL
0901: INDGLILKIE NMLVETDELD QIRPNYEATL EIRAMDNPFS VSVPCKVNPG PLKRVAVNNP KALENLLPDS TVEDFILELF DGYNNHVAEG TDVLIHIDGY
1001: RIEDWMGINR KVDSRGCINL SGILKVTEGY GKSVSLSVMS GNEVIFCKES QIDERQLRLV TELPDCCTAG TNLMNLIFQV TELDGSLDTS IHHDEKSGCF
1101: HTMSIESDSS SVESAIRYAF VHGSCKVSSL SLPENEGVFS CRVFHSRYPE LQMSIKIQVT SAPTSEREES GYSTPHSKTT PPPESGIPSI TNPWPTPCSQ
1201: FGVLAIRSSS LALSSETSLM DMAQYTEDLK EKINIDEERR VELEERLKCL QAQREHAEQE CSRLQASLEP LGAPFPECLS TKESMMKQIE EKHHDTAASV
1301: FCCLYRKAPP PRSLFLSQKG MFGVVALLGS VASTSLSRVL SEYLGKDTML SLVCKSSQFG PKSDEYRKFQ SEAASLGRSI TNRFLVICLD ATRPWRNGLV
1401: RNDPQKRLAM DNPYLPNGDP IPGFKGYAVN MIDLASEELD IQSSSGYGLR ETLFYGVFRE LQVYETAEHL EAALPHINGG DAVSLDGVIA RENGFIYSGC
1501: CTPEVHFPIT VTERQEKALV QLEITRDKKR KTEEMMTEEN RSLRRLVKKL KKANEKYQNF TAMADS
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRRTLVSSKT KESKKVFTLQ FKKEALIDNR SIVGKNWKTD GGMRDPSEEE MKLSPHGSFT
0301: KVEIFESEFD ISKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVAFQVNG EDLAEIAGGE VAITNLHSKG QFFSFQIRFT LFGGKRKGTA QEANARLKFV
0401: YFPIVQGKES IEKILQSLEE EGCKVSESFQ TFGRVSLRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFVDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKSTEK EKDDDVNIVI HREGKSVSYA HLEEKYQEWV LEMHNTHDEE AASGLDEAVL IVGSLDKKAL GILRDAVRVH KEVRRKEKTW KRGQNIKILR
0601: GAYAGIHNNN VYATIDYFLI EGFEDEAGGD TRILCRPIDR PENEGCKLSI IDGISKLEVQ SSLSLPITII DSGKCLPVDA NEWNRKLDKQ QEKAPSKIDL
0701: LDERDCRELK IDGELPIGNS VRAGKAPPKQ IVAVVRPACF TSLTPSKKLD QKNIVKMDGE EMVMVVKLKS SDKNISSQRL FPTSRKGISG LYIFSLGSKF
0801: PNLFKKAGTY NFSFSIGNSI KCNKTVVVRP SSKAARWELD DNLESLPCNV RVGSSLPPFR IACFDKYKNK IPFTSVPSLE VELEASPGFL IKIDKLETNL
0901: INDGLILKIE NMLVETDELD QIRPNYEATL EIRAMDNPFS VSVPCKVNPG PLKRVAVNNP KALENLLPDS TVEDFILELF DGYNNHVAEG TDVLIHIDGY
1001: RIEDWMGINR KVDSRGCINL SGILKVTEGY GKSVSLSVMS GNEVIFCKES QIDERQLRLV TELPDCCTAG TNLMNLIFQV TELDGSLDTS IHHDEKSGCF
1101: HTMSIESDSS SVESAIRYAF VHGSCKVSSL SLPENEGVFS CRVFHSRYPE LQMSIKIQVT SAPTSEREES GYSTPHSKTT PPPESGIPSI TNPWPTPCSQ
1201: FGVLAIRSSS LALSSETSLM DMAQYTEDLK EKINIDEERR VELEERLKCL QAQREHAEQE CSRLQASLEP LGAPFPECLS TKESMMKQIE EKHHDTAASV
1301: FCCLYRKAPP PRSLFLSQKG MFGVVALLGS VASTSLSRVL SEYLGKDTML SLVCKSSQFG PKSDEYRKFQ SEAASLGRSI TNRFLVICLD ATRPWRNGLV
1401: RNDPQKRLAM DNPYLPNGDP IPGFKGYAVN MIDLASEELD IQSSSGYGLR ETLFYGVFRE LQVYETAEHL EAALPHINGG DAVSLDGVIA RENGFIYSGC
1501: CTPEVHFPIT VTERQEKALV QLEITRDKKR KTEEMMTEEN RSLRRLVKKL KKANEKYQNF TAMADS
Arabidopsis Description
GMI1Structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 [Source:UniProtKB/Swiss-Prot;Acc:F4KFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.