Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009745.1-P | Field mustard | nucleus | 70.96 | 70.92 |
| CDX80426 | Canola | cytosol | 70.03 | 70.55 |
| CDX88088 | Canola | cytosol | 70.65 | 70.26 |
| AT5G24275.1 | Thale cress | cytosol | 24.09 | 47.71 |
| AT3G49250.1 | Thale cress | cytosol | 6.45 | 24.52 |
Protein Annotations
| MapMan:35.1 | EntrezGene:832495 | ProteinID:AED93279.1 | ArrayExpress:AT5G24280 | EnsemblPlantsGene:AT5G24280 | RefSeq:AT5G24280 |
| TAIR:AT5G24280 | RefSeq:AT5G24280-TAIR-G | EnsemblPlants:AT5G24280.1 | TAIR:AT5G24280.1 | Unigene:At.70766 | ProteinID:BAB10394.1 |
| ncoils:Coil | UniProt:F4KFS5 | Symbol:GMI1 | GO:GO:0000724 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:HATPase_C_sf | InterPro:IPR036890 |
| RefSeq:NP_197816.3 | PFAM:PF13589 | PO:PO:0000037 | PO:PO:0000229 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006079 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33566 | PANTHER:PTHR33566:SF3 |
| SUPFAM:SSF55874 | UniParc:UPI0001E9306B | SEG:seg | : | : | : |
Description
GMI1Structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 [Source:UniProtKB/Swiss-Prot;Acc:F4KFS5]
Coordinates
chr5:-:8251378..8262154
Molecular Weight (calculated)
179134.0 Da
IEP (calculated)
6.755
GRAVY (calculated)
-0.362
Length
1598 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSRRSVKRS LVLDDDDDED IFYNFKVLLP NGTSVKLTLK NPEPEISMQS FVNLVKKEYD NARKDCLLMS KRMKVDWNSG GKFHLESNGG KMKGIVRFAA
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRCDFSFCLP ILICIVLLRL TLFSVRRTLV SSKTKESKKV FTLQFKKEAL IDNRSIVGKN
0301: WKTDGGMRDP SEEEMKLSPH GSFTKVEIFE SEFDISKIYQ LQCRLKDIYF PYIQFCLATI FLCDELSKTG RTERPVAFQV NGEDLAEIAG GEVAITNLHS
0401: KGQFFSFQIR FTLFGGKRKG TAQEANARLK FVYFPIVQGK ESIEKILQSL EEEGCKVSES FQTFGRVSLR RLGRLLPEVR WDSIPFMQRG NRASTLQKSC
0501: RRVKCFVDLD AGFSPTPSKT DLASQNPFSV ALRNFGSKST EKEKDDDVNI VIHREGKSVS YAHLEEKYQE WVLEMHNTHD EEAASGLDEA VLIVGSLDKK
0601: ALGILRDAVR VHKEVRRKEK TWKRGQNIKI LRGAYAGIHN NNVYATIDYF LIEGFEDEAG GDTRILCRPI DRPENEGCKL SIIDGISKLE VQSSLSLPIT
0701: IIDSGKCLPV DANEWNRKLD KQQEKAPSKI DLLDERDCRE LKIDGELPIG NSVRAGKAPP KQIVAVVRPA CFTSLTPSKK LDQKNIVKMD GEEMVMVVKL
0801: KSSDKNISSQ RLFPTSRKGI SGLYIFSLGS KFPNLFKKAG TYNFSFSIGN SIKCNKTVVV RPSSKAARWE LDDNLESLPC NVRVGSSLPP FRIACFDKYK
0901: NKIPFTSVPS LEVELEASPG FLIKIDKLET NLINDGLILK IENMLVETDE LDQIRPNYEA TLEIRAMDNP FSVSVPCKVN PGPLKRVAVN NPKALENLLP
1001: DSTVEDFILE LFDGYNNHVA EGTDVLIHID GYRIEDWMGI NRKVDSRGCI NLSGILKVTE GYGKSVSLSV MSGNEVIFCK ESQIDERQLR LVTELPDCCT
1101: AGTNLMNLIF QVTELDGSLD TSIHHDEKSG CFHTMSIESD SSSVESAIRY AFVHGSCKVS SLSLPENEGV FSCRVFHSRY PELQMSIKIQ VTSAPTSERE
1201: ESGYSTPHSK TTPPPESGIP SITNPWPTPC SQFGVLAIRS SSLALSSETS LMDMAQYTED LKEKINIDEE RRVELEERLK CLQAQREHAE QECSRLQASL
1301: EPLGAPFPEC LSTKESMMKQ IEEKHHDTAA SVFCCLYRKA PPPRSLFLSQ KGMFGVVALL GSVASTSLSR VLSEYLGKDT MLSLVCKSSQ FGPKSDEYRK
1401: FQSEAASLGR SITNRFLVIC LDATRPWRNG LVRNDPQKRL AMDNPYLPNG DPIPGFKGYA VNMIDLASEE LDIQSSSGYG LRETLFYGVF RELQVYETAE
1501: HLEAALPHIN GGDAVSLDGV IARENGFIYS GCCTPEVHFP ITVTERQEKA LVQLEITRDK KRKTEEMMTE ENRSLRRLVK KLKKANEKYQ NFTAMADS
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRCDFSFCLP ILICIVLLRL TLFSVRRTLV SSKTKESKKV FTLQFKKEAL IDNRSIVGKN
0301: WKTDGGMRDP SEEEMKLSPH GSFTKVEIFE SEFDISKIYQ LQCRLKDIYF PYIQFCLATI FLCDELSKTG RTERPVAFQV NGEDLAEIAG GEVAITNLHS
0401: KGQFFSFQIR FTLFGGKRKG TAQEANARLK FVYFPIVQGK ESIEKILQSL EEEGCKVSES FQTFGRVSLR RLGRLLPEVR WDSIPFMQRG NRASTLQKSC
0501: RRVKCFVDLD AGFSPTPSKT DLASQNPFSV ALRNFGSKST EKEKDDDVNI VIHREGKSVS YAHLEEKYQE WVLEMHNTHD EEAASGLDEA VLIVGSLDKK
0601: ALGILRDAVR VHKEVRRKEK TWKRGQNIKI LRGAYAGIHN NNVYATIDYF LIEGFEDEAG GDTRILCRPI DRPENEGCKL SIIDGISKLE VQSSLSLPIT
0701: IIDSGKCLPV DANEWNRKLD KQQEKAPSKI DLLDERDCRE LKIDGELPIG NSVRAGKAPP KQIVAVVRPA CFTSLTPSKK LDQKNIVKMD GEEMVMVVKL
0801: KSSDKNISSQ RLFPTSRKGI SGLYIFSLGS KFPNLFKKAG TYNFSFSIGN SIKCNKTVVV RPSSKAARWE LDDNLESLPC NVRVGSSLPP FRIACFDKYK
0901: NKIPFTSVPS LEVELEASPG FLIKIDKLET NLINDGLILK IENMLVETDE LDQIRPNYEA TLEIRAMDNP FSVSVPCKVN PGPLKRVAVN NPKALENLLP
1001: DSTVEDFILE LFDGYNNHVA EGTDVLIHID GYRIEDWMGI NRKVDSRGCI NLSGILKVTE GYGKSVSLSV MSGNEVIFCK ESQIDERQLR LVTELPDCCT
1101: AGTNLMNLIF QVTELDGSLD TSIHHDEKSG CFHTMSIESD SSSVESAIRY AFVHGSCKVS SLSLPENEGV FSCRVFHSRY PELQMSIKIQ VTSAPTSERE
1201: ESGYSTPHSK TTPPPESGIP SITNPWPTPC SQFGVLAIRS SSLALSSETS LMDMAQYTED LKEKINIDEE RRVELEERLK CLQAQREHAE QECSRLQASL
1301: EPLGAPFPEC LSTKESMMKQ IEEKHHDTAA SVFCCLYRKA PPPRSLFLSQ KGMFGVVALL GSVASTSLSR VLSEYLGKDT MLSLVCKSSQ FGPKSDEYRK
1401: FQSEAASLGR SITNRFLVIC LDATRPWRNG LVRNDPQKRL AMDNPYLPNG DPIPGFKGYA VNMIDLASEE LDIQSSSGYG LRETLFYGVF RELQVYETAE
1501: HLEAALPHIN GGDAVSLDGV IARENGFIYS GCCTPEVHFP ITVTERQEKA LVQLEITRDK KRKTEEMMTE ENRSLRRLVK KLKKANEKYQ NFTAMADS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.