Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G24280.1 | Thale cress | nucleus, plasma membrane, plastid | 47.71 | 24.09 |
| CDX80422 | Canola | cytosol | 46.72 | 24.03 |
| Bra009741.1-P | Field mustard | cytosol | 45.23 | 23.34 |
| CDX88084 | Canola | cytosol | 44.73 | 22.94 |
| AT3G49250.1 | Thale cress | cytosol | 9.42 | 18.1 |
Protein Annotations
| ArrayExpress:AT5G24275 | EnsemblPlants:AT5G24275.1 | EnsemblPlantsGene:AT5G24275 | EntrezGene:28721193 | InterPro:DUF287 | ncoils:Coil |
| PFAM:PF03384 | ProteinID:ANM69635.1 | ProteinID:ANM69636.1 | ProteinID:ANM69637.1 | ProteinID:ANM69638.1 | RefSeq:NP_001331298.1 |
| RefSeq:NP_001331299.1 | RefSeq:NP_001331300.1 | RefSeq:NP_001331301.1 | SEG:seg | UniParc:UPI0008489EDD | UniProt:A0A1P8BDF3 |
| MapMan:35.1 | : | : | : | : | : |
Description
En/Spm-like transposon [Source:UniProtKB/TrEMBL;Acc:A0A1P8BDF3]
Coordinates
chr5:-:8244369..8248689
Molecular Weight (calculated)
90439.9 Da
IEP (calculated)
5.223
GRAVY (calculated)
-0.506
Length
807 amino acids
Sequence
(BLAST)
(BLAST)
001: MCKMKFKPSS MKGFPISELY DTLGTTKEIK SIMLPSPSEK ELLKQIMDDE VGHDDVDDMI VDGWTKRIIK ENKPICFEEL HIQDVSSREI EANPKNANVV
101: GVRVGRKKVA LKKVSEKGIV EQLQKQLEDG LNRIYMKIDD MDTRLTYVES CVKNLKEAKD TKGEKEDGEK EKELEENDLE EDETETDKEK EKEDESSEKR
201: SKVERMYGRK RTRTTTAKEQ EEKGEEIQVG FQETSERGRK KAKLTWKKVD IKGVTADQGN SITTNERVVV EPSSKVGSWK LASNLKSTRQ YNVQVGSSLP
301: PCSISCVDEP FSVSVSCKVN PGPLKHVVEK YPEALENLLP GSTVQNYILE VFDGYNNHVA EGTNVLICIE GYCINDSMGL NQKVNSCGCI DLSGILQVTA
401: GYGKTISLSV MSGIDEIFKK ESQTERRELM LLTKLPECCV AGSNLTNLIF KVTDSDGVMD TSIHHDEKSG CFHTMSIETD SSSDESEIRY AFVHGSCKVP
501: TLSLPEREGV FSFKVFHSRF PELHLSLKIQ LTPAQILQRD ETSYSRMGLT PKSKMASTTY SPALSSQTGP SLRDVAQFTE SFKENLIGYS EHRVEIDERL
601: HCLEAEQNQA KEELRTLQAS LEPLGAMFPE CLSTKESMMK QIEEKHHDTA ASVFCCLYRK SPPPQSLFLS KKGVFGLVAL LGSVASTSLS RVLSEYLGED
701: MLLALVCKSA QIGPNNAEFL RLQSNHRFHV LCLDAIRPWK DGLLENDPQK KLAMDDPKLP DGDPIPGFKG YAVNMIDLAP EELTVQTYSG YGLRETLFYN
801: LFGNLQV
101: GVRVGRKKVA LKKVSEKGIV EQLQKQLEDG LNRIYMKIDD MDTRLTYVES CVKNLKEAKD TKGEKEDGEK EKELEENDLE EDETETDKEK EKEDESSEKR
201: SKVERMYGRK RTRTTTAKEQ EEKGEEIQVG FQETSERGRK KAKLTWKKVD IKGVTADQGN SITTNERVVV EPSSKVGSWK LASNLKSTRQ YNVQVGSSLP
301: PCSISCVDEP FSVSVSCKVN PGPLKHVVEK YPEALENLLP GSTVQNYILE VFDGYNNHVA EGTNVLICIE GYCINDSMGL NQKVNSCGCI DLSGILQVTA
401: GYGKTISLSV MSGIDEIFKK ESQTERRELM LLTKLPECCV AGSNLTNLIF KVTDSDGVMD TSIHHDEKSG CFHTMSIETD SSSDESEIRY AFVHGSCKVP
501: TLSLPEREGV FSFKVFHSRF PELHLSLKIQ LTPAQILQRD ETSYSRMGLT PKSKMASTTY SPALSSQTGP SLRDVAQFTE SFKENLIGYS EHRVEIDERL
601: HCLEAEQNQA KEELRTLQAS LEPLGAMFPE CLSTKESMMK QIEEKHHDTA ASVFCCLYRK SPPPQSLFLS KKGVFGLVAL LGSVASTSLS RVLSEYLGED
701: MLLALVCKSA QIGPNNAEFL RLQSNHRFHV LCLDAIRPWK DGLLENDPQK KLAMDDPKLP DGDPIPGFKG YAVNMIDLAP EELTVQTYSG YGLRETLFYN
801: LFGNLQV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.