Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009741.1-P | Field mustard | cytosol | 97.2 | 97.83 |
| CDX80422 | Canola | cytosol | 92.31 | 92.61 |
| CDX80426 | Canola | cytosol | 59.4 | 58.95 |
| CDX88088 | Canola | cytosol | 59.91 | 58.68 |
| AT5G24275.1 | Thale cress | cytosol | 22.94 | 44.73 |
| CDY05915 | Canola | cytosol | 6.1 | 22.86 |
| CDY08119 | Canola | cytosol, plastid | 6.1 | 22.75 |
| CDX86984 | Canola | cytosol | 5.78 | 22.64 |
| CDY00194 | Canola | cytosol | 5.78 | 22.52 |
Protein Annotations
| EnsemblPlants:CDX88084 | EnsemblPlantsGene:GSBRNA2T00147508001 | Gene3D:3.30.565.10 | InterPro:HATPase_C_sf | InterPro:IPR036890 | ncoils:Coil |
| PANTHER:PTHR33566 | PANTHER:PTHR33566:SF3 | PFAM:PF13589 | ProteinID:CDX88084 | ProteinID:CDX88084.1 | SEG:seg |
| SUPFAM:SSF55874 | UniParc:UPI0004EEB349 | MapMan:35.1 | : | : | : |
Description
BnaA06g26750D
Coordinates
chrLK031854:+:494260..502372
Molecular Weight (calculated)
176722.0 Da
IEP (calculated)
6.045
GRAVY (calculated)
-0.370
Length
1574 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSNRRPLKRA LVQVDDDEEE DKFYKLKILL PNGTNVTLTL NNPQPEMSMR NFVNLVKEEY EKTRKSCELS GKMRKRIDWN LAAESYLDFN GEKIRGMVRL
0101: ETFKPDMCNI LRLDDGSGEA TTMYENMWDL TPDTDMLKEL PENYSFETAL ADLIDNSLQA VWSCSPGNRR LISVDVLEDR ISVFDSGPGM DSSKENSIAK
0201: WGKIGASIHR AHKSKAIGGK PPYLMPFFGM FGYGGAYACM HLGIRTLVSS KTKQSKKVFT LQLNKEALIG NRSTSGKNWK VDGGMRDPLE EEMKLSPHGS
0301: FTKVEIFEWN CKIPEIYQLQ CRLKDIYFPY IQYDEVSKTG RTLRPVEFQV HGEDLTEIVG GEVATTNLNS KGEEFWFQIR FCEKRKGTSQ EANARLKFVY
0401: FPIVHGKESI DIIMESLEKE GYKVSESFQA FGRVSVRRLG RLLPEVPWVS IPFMERGARA TTLQKCCQRV KCFVDLDAGF VPTPSKTDLA SQNLFSVALK
0501: NFGSKSKEKD NDVSMVIHRE GKSLAYGQVE KGYEEWVLKM HKSYDEEDAL GEDEATVIFD SLDKKALCIS PDCEAVRVHK VMKRKSKSWE RGQKIKIMKG
0601: ACAGVHQNDV YATIDYFLIE NFEDETGAGD ARIICRQINF SEEEGCMLLT IKGISKLEIR KSSSFPISII DTEKCVLIDD NEWNRKLVKQ KEKDPSRIDL
0701: LDEKDCRTLK FNGETTIGAS VCAGQTPPQQ IVAVVRSASY TSSKMSKKLD QKHIVKVDGE MLMEVELQGT EMKSREKNAK PLYSDRCFPT NRGGLHGLYI
0801: FQLESKIPHL FKKAGTYIFS FSVGNSVTCK KKVIVKPSSK VGSWKLGGNQ ETINVRVGSS LPPLSIYCLD EYENQIPFSS VPSLEVRLKA SPEFEVPVYK
0901: IEANLDRGIL KLMNMLVQTD ALDDIRPDYE ATLEICSRDE PFSVSVDCIV KPGPLKCVVE KDAHALENLL PDSTVENFIL EMFDEYNNHV AEGTNVPICT
1001: SGFFIQDRMC LDLKVDSDGC IDLSGILKVT AGYGKPVSLS IMSGNKEIFK KESLVEIREL RLLTELPEYC TAGTNLTNLK LKVTDSYGIM DTSINNESEC
1101: FHTMSIESDS SSVDSTTRYA FVHGSCKITS LSLPETEGAF SFKVFHSRHP ELHMNLKIQL TPAQTFERDE IGCSEPNPRI YLTPQSKMGS TTNPLGIPTQ
1201: QTPPSQFRVL SIREISSAIS SQTAPVDMEQ FSEYTEILKA KLNSYNERIS EANECLKCLE AEQEEAVQEL SALQASLEPH GVSFPECLST KESMVKHIEE
1301: KYHNTAASVF CSLYINVPAS KSMLLSKEGV LGIVALLGSV ASTPLSRVLS EYLGEVTMLA LVCKSSRPGQ NIDPMLQSEA ARLERSITSR FHVLCLGATS
1401: PWTGGLVEND PQRKLAMDDP KLPDGDPIPG FIGYAVNMIY LAEKELNIKT YKGHGLRETL FYGVFGKLQV YETQTQVEEA LLHISGDGAV SLDGFIAKGN
1501: EFICSGCSKP EIHFPITVRE NEEEKWSNLE EARNRVRRVE KKLVAARCLL SKLEKKMNKA NERYDSATKL SLES
0101: ETFKPDMCNI LRLDDGSGEA TTMYENMWDL TPDTDMLKEL PENYSFETAL ADLIDNSLQA VWSCSPGNRR LISVDVLEDR ISVFDSGPGM DSSKENSIAK
0201: WGKIGASIHR AHKSKAIGGK PPYLMPFFGM FGYGGAYACM HLGIRTLVSS KTKQSKKVFT LQLNKEALIG NRSTSGKNWK VDGGMRDPLE EEMKLSPHGS
0301: FTKVEIFEWN CKIPEIYQLQ CRLKDIYFPY IQYDEVSKTG RTLRPVEFQV HGEDLTEIVG GEVATTNLNS KGEEFWFQIR FCEKRKGTSQ EANARLKFVY
0401: FPIVHGKESI DIIMESLEKE GYKVSESFQA FGRVSVRRLG RLLPEVPWVS IPFMERGARA TTLQKCCQRV KCFVDLDAGF VPTPSKTDLA SQNLFSVALK
0501: NFGSKSKEKD NDVSMVIHRE GKSLAYGQVE KGYEEWVLKM HKSYDEEDAL GEDEATVIFD SLDKKALCIS PDCEAVRVHK VMKRKSKSWE RGQKIKIMKG
0601: ACAGVHQNDV YATIDYFLIE NFEDETGAGD ARIICRQINF SEEEGCMLLT IKGISKLEIR KSSSFPISII DTEKCVLIDD NEWNRKLVKQ KEKDPSRIDL
0701: LDEKDCRTLK FNGETTIGAS VCAGQTPPQQ IVAVVRSASY TSSKMSKKLD QKHIVKVDGE MLMEVELQGT EMKSREKNAK PLYSDRCFPT NRGGLHGLYI
0801: FQLESKIPHL FKKAGTYIFS FSVGNSVTCK KKVIVKPSSK VGSWKLGGNQ ETINVRVGSS LPPLSIYCLD EYENQIPFSS VPSLEVRLKA SPEFEVPVYK
0901: IEANLDRGIL KLMNMLVQTD ALDDIRPDYE ATLEICSRDE PFSVSVDCIV KPGPLKCVVE KDAHALENLL PDSTVENFIL EMFDEYNNHV AEGTNVPICT
1001: SGFFIQDRMC LDLKVDSDGC IDLSGILKVT AGYGKPVSLS IMSGNKEIFK KESLVEIREL RLLTELPEYC TAGTNLTNLK LKVTDSYGIM DTSINNESEC
1101: FHTMSIESDS SSVDSTTRYA FVHGSCKITS LSLPETEGAF SFKVFHSRHP ELHMNLKIQL TPAQTFERDE IGCSEPNPRI YLTPQSKMGS TTNPLGIPTQ
1201: QTPPSQFRVL SIREISSAIS SQTAPVDMEQ FSEYTEILKA KLNSYNERIS EANECLKCLE AEQEEAVQEL SALQASLEPH GVSFPECLST KESMVKHIEE
1301: KYHNTAASVF CSLYINVPAS KSMLLSKEGV LGIVALLGSV ASTPLSRVLS EYLGEVTMLA LVCKSSRPGQ NIDPMLQSEA ARLERSITSR FHVLCLGATS
1401: PWTGGLVEND PQRKLAMDDP KLPDGDPIPG FIGYAVNMIY LAEKELNIKT YKGHGLRETL FYGVFGKLQV YETQTQVEEA LLHISGDGAV SLDGFIAKGN
1501: EFICSGCSKP EIHFPITVRE NEEEKWSNLE EARNRVRRVE KKLVAARCLL SKLEKKMNKA NERYDSATKL SLES
0001: MSSRRSVKRS LVLDDDDDED IFYNFKVLLP NGTSVKLTLK NPEPEISMQS FVNLVKKEYD NARKDCLLMS KRMKVDWNSG GKFHLESNGG KMKGIVRFAA
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRRTLVSSKT KESKKVFTLQ FKKEALIDNR SIVGKNWKTD GGMRDPSEEE MKLSPHGSFT
0301: KVEIFESEFD ISKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVAFQVNG EDLAEIAGGE VAITNLHSKG QFFSFQIRFT LFGGKRKGTA QEANARLKFV
0401: YFPIVQGKES IEKILQSLEE EGCKVSESFQ TFGRVSLRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFVDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKSTEK EKDDDVNIVI HREGKSVSYA HLEEKYQEWV LEMHNTHDEE AASGLDEAVL IVGSLDKKAL GILRDAVRVH KEVRRKEKTW KRGQNIKILR
0601: GAYAGIHNNN VYATIDYFLI EGFEDEAGGD TRILCRPIDR PENEGCKLSI IDGISKLEVQ SSLSLPITII DSGKCLPVDA NEWNRKLDKQ QEKAPSKIDL
0701: LDERDCRELK IDGELPIGNS VRAGKAPPKQ IVAVVRPACF TSLTPSKKLD QKNIVKMDGE EMVMVVKLKS SDKNISSQRL FPTSRKGISG LYIFSLGSKF
0801: PNLFKKAGTY NFSFSIGNSI KCNKTVVVRP SSKAARWELD DNLESLPCNV RVGSSLPPFR IACFDKYKNK IPFTSVPSLE VELEASPGFL IKIDKLETNL
0901: INDGLILKIE NMLVETDELD QIRPNYEATL EIRAMDNPFS VSVPCKVNPG PLKRVAVNNP KALENLLPDS TVEDFILELF DGYNNHVAEG TDVLIHIDGY
1001: RIEDWMGINR KVDSRGCINL SGILKVTEGY GKSVSLSVMS GNEVIFCKES QIDERQLRLV TELPDCCTAG TNLMNLIFQV TELDGSLDTS IHHDEKSGCF
1101: HTMSIESDSS SVESAIRYAF VHGSCKVSSL SLPENEGVFS CRVFHSRYPE LQMSIKIQVT SAPTSEREES GYSTPHSKTT PPPESGIPSI TNPWPTPCSQ
1201: FGVLAIRSSS LALSSETSLM DMAQYTEDLK EKINIDEERR VELEERLKCL QAQREHAEQE CSRLQASLEP LGAPFPECLS TKESMMKQIE EKHHDTAASV
1301: FCCLYRKAPP PRSLFLSQKG MFGVVALLGS VASTSLSRVL SEYLGKDTML SLVCKSSQFG PKSDEYRKFQ SEAASLGRSI TNRFLVICLD ATRPWRNGLV
1401: RNDPQKRLAM DNPYLPNGDP IPGFKGYAVN MIDLASEELD IQSSSGYGLR ETLFYGVFRE LQVYETAEHL EAALPHINGG DAVSLDGVIA RENGFIYSGC
1501: CTPEVHFPIT VTERQEKALV QLEITRDKKR KTEEMMTEEN RSLRRLVKKL KKANEKYQNF TAMADS
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRRTLVSSKT KESKKVFTLQ FKKEALIDNR SIVGKNWKTD GGMRDPSEEE MKLSPHGSFT
0301: KVEIFESEFD ISKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVAFQVNG EDLAEIAGGE VAITNLHSKG QFFSFQIRFT LFGGKRKGTA QEANARLKFV
0401: YFPIVQGKES IEKILQSLEE EGCKVSESFQ TFGRVSLRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFVDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKSTEK EKDDDVNIVI HREGKSVSYA HLEEKYQEWV LEMHNTHDEE AASGLDEAVL IVGSLDKKAL GILRDAVRVH KEVRRKEKTW KRGQNIKILR
0601: GAYAGIHNNN VYATIDYFLI EGFEDEAGGD TRILCRPIDR PENEGCKLSI IDGISKLEVQ SSLSLPITII DSGKCLPVDA NEWNRKLDKQ QEKAPSKIDL
0701: LDERDCRELK IDGELPIGNS VRAGKAPPKQ IVAVVRPACF TSLTPSKKLD QKNIVKMDGE EMVMVVKLKS SDKNISSQRL FPTSRKGISG LYIFSLGSKF
0801: PNLFKKAGTY NFSFSIGNSI KCNKTVVVRP SSKAARWELD DNLESLPCNV RVGSSLPPFR IACFDKYKNK IPFTSVPSLE VELEASPGFL IKIDKLETNL
0901: INDGLILKIE NMLVETDELD QIRPNYEATL EIRAMDNPFS VSVPCKVNPG PLKRVAVNNP KALENLLPDS TVEDFILELF DGYNNHVAEG TDVLIHIDGY
1001: RIEDWMGINR KVDSRGCINL SGILKVTEGY GKSVSLSVMS GNEVIFCKES QIDERQLRLV TELPDCCTAG TNLMNLIFQV TELDGSLDTS IHHDEKSGCF
1101: HTMSIESDSS SVESAIRYAF VHGSCKVSSL SLPENEGVFS CRVFHSRYPE LQMSIKIQVT SAPTSEREES GYSTPHSKTT PPPESGIPSI TNPWPTPCSQ
1201: FGVLAIRSSS LALSSETSLM DMAQYTEDLK EKINIDEERR VELEERLKCL QAQREHAEQE CSRLQASLEP LGAPFPECLS TKESMMKQIE EKHHDTAASV
1301: FCCLYRKAPP PRSLFLSQKG MFGVVALLGS VASTSLSRVL SEYLGKDTML SLVCKSSQFG PKSDEYRKFQ SEAASLGRSI TNRFLVICLD ATRPWRNGLV
1401: RNDPQKRLAM DNPYLPNGDP IPGFKGYAVN MIDLASEELD IQSSSGYGLR ETLFYGVFRE LQVYETAEHL EAALPHINGG DAVSLDGVIA RENGFIYSGC
1501: CTPEVHFPIT VTERQEKALV QLEITRDKKR KTEEMMTEEN RSLRRLVKKL KKANEKYQNF TAMADS
Arabidopsis Description
GMI1Structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 [Source:UniProtKB/Swiss-Prot;Acc:F4KFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.