Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88088 | Canola | cytosol | 90.54 | 89.36 |
| AT5G24280.1 | Thale cress | nucleus, plasma membrane, plastid | 70.55 | 70.03 |
| CDX80422 | Canola | cytosol | 59.46 | 60.1 |
| CDX88084 | Canola | cytosol | 58.95 | 59.4 |
| CDY00194 | Canola | cytosol | 6.75 | 26.49 |
| CDX86984 | Canola | cytosol | 6.68 | 26.37 |
| CDY08119 | Canola | cytosol, plastid | 6.49 | 24.41 |
| CDY05915 | Canola | cytosol | 6.43 | 24.29 |
Protein Annotations
| EnsemblPlants:CDX80426 | EnsemblPlantsGene:GSBRNA2T00133497001 | Gene3D:3.30.565.10 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:IPR036890 |
| ncoils:Coil | PANTHER:PTHR33566 | PANTHER:PTHR33566:SF3 | PFAM:PF13589 | ProteinID:CDX80426 | ProteinID:CDX80426.1 |
| SEG:seg | SUPFAM:SSF55874 | UniParc:UPI0004EE492E | MapMan:35.1 | : | : |
Description
BnaC07g30180D
Coordinates
chrLK031821:-:382541..392998
Molecular Weight (calculated)
176725.0 Da
IEP (calculated)
6.349
GRAVY (calculated)
-0.361
Length
1586 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSFRRLVKRA LILDEDDEDD VVYSFKVLLP NSTSVPLTVT NPGPEMPMET FVNLVKEEYD KARKSCLLMT KRRRVDWNLG GKFHLESDSE KMEGMVRFAA
0101: FKPNSLHIIR LDDGSGVTST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW SCSPGERRLI SVDVSADRIS VFDTGRGMDS SEENAIVKWG
0201: KIGGSLHRSE KTFAIGGKPP YLKPFFGMFG YGGPYACMFL GRRTLVSSKT KESKKVFTLQ FEKEALIGNH SVSGKHWKTS GGMRDPTEEE NKLSPHGSFT
0301: KVEIFESEFD MSKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVEFQVSG EDLAEIAGGE VAITNLNSKG EEFSFQIRFS LASEKRKGKP QQANARLKFV
0401: YFPIVQGKES IEKILEGLQE EGCKVSESFE TFGRVSIRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFIDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKQTDK DKDTDVKMVI HREGKPVTQL EQNYQDWVMK MHDAHDEEAT SGEDEAILVL ESLDKKALGI LRDAVRVHKV VTRNGKLWKR GQNIKLLKGA
0601: CGGVHNGNIY ATIDYFLIEG FEDEAGAGDT RILCRWPIDC PKKEGCKLSC IDGSWRLELQ KSLTLPITII DSGKCLHADA DEWTRKLERQ QEKAPSKIDL
0701: LDERDCRELN IDGALPVSVR VGRAPPQQIV AVIRPASFTS VTPSKKLEQK HVVSMEGKEM VMVVKLVDPN TKPNAKVATK SVCSQRVFPT SCKGIGGLYI
0801: FSLGSKFPNL FKRAGTYNFS FSIGDSIRCN KTVVVKPSSK AAKWKLDDSL DPLPCNVRVG SCIGPLRIAC FDEYENQIQF TSVPSLEVEL KANAGFDLKI
0901: DDFETNLIDG GSTLMIKEML VETDALDKIG PSYDATLEIR AQDKPLSVSI ACKVNPGPLK RVEVNNPQAF ENLLPGSTVE NLILEMFDGF NNHIAEGTSV
1001: LINTEGYCIE DWMGVNRKVD GSGCIDLSGI LKVTEGYGKH VSFSVVSDCK EIFRKESQIE ERELRLVTER PESCTAGSNL TSLIFKVTDS DGSLDTSIHH
1101: DEKTRCIHTL SVESDSSSVE SGIRYAFVHG SCKIPSLSLP ETEGIFSVKV FHSRYPELHV NLEILITPAP TSERDDVGCS TPYSRMTSTP QSGMASATPF
1201: PRVGLERTPC SQFGVLAIRS PSLDGSCPSG VMDIPQYTKS LKQELSTYEA QQEEIDERIK CLEGEQEQAE QELITLQASL DSICAALPEC LSTRESMMKH
1301: IEEEHQDTAA SVFCSLTKKV PPPRSLFLSI KGGVFGIVAL LGSVASTSLS RILSAYLGKE KMLALVCKSS AYRASYAEYL RLQDEAARLG RSITNPPQVI
1401: CLNAYTPWRS GLVENDPQRR LDMVNPSLRN GGPIPGFKGY AVNMIELAVR DLDIGTNGHG LRETLFYGLF GDLQVYETGK DLEAALPYIK DGVDAVSLDG
1501: VISNRDGFLF SGCCVPDVHF PVTVPENHEK TLVKMEIKRD KKRKREEELV EERGLLRKIE KKMKKATKKY ERFSAMADSQ DRINKC
0101: FKPNSLHIIR LDDGSGVTST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW SCSPGERRLI SVDVSADRIS VFDTGRGMDS SEENAIVKWG
0201: KIGGSLHRSE KTFAIGGKPP YLKPFFGMFG YGGPYACMFL GRRTLVSSKT KESKKVFTLQ FEKEALIGNH SVSGKHWKTS GGMRDPTEEE NKLSPHGSFT
0301: KVEIFESEFD MSKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVEFQVSG EDLAEIAGGE VAITNLNSKG EEFSFQIRFS LASEKRKGKP QQANARLKFV
0401: YFPIVQGKES IEKILEGLQE EGCKVSESFE TFGRVSIRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFIDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKQTDK DKDTDVKMVI HREGKPVTQL EQNYQDWVMK MHDAHDEEAT SGEDEAILVL ESLDKKALGI LRDAVRVHKV VTRNGKLWKR GQNIKLLKGA
0601: CGGVHNGNIY ATIDYFLIEG FEDEAGAGDT RILCRWPIDC PKKEGCKLSC IDGSWRLELQ KSLTLPITII DSGKCLHADA DEWTRKLERQ QEKAPSKIDL
0701: LDERDCRELN IDGALPVSVR VGRAPPQQIV AVIRPASFTS VTPSKKLEQK HVVSMEGKEM VMVVKLVDPN TKPNAKVATK SVCSQRVFPT SCKGIGGLYI
0801: FSLGSKFPNL FKRAGTYNFS FSIGDSIRCN KTVVVKPSSK AAKWKLDDSL DPLPCNVRVG SCIGPLRIAC FDEYENQIQF TSVPSLEVEL KANAGFDLKI
0901: DDFETNLIDG GSTLMIKEML VETDALDKIG PSYDATLEIR AQDKPLSVSI ACKVNPGPLK RVEVNNPQAF ENLLPGSTVE NLILEMFDGF NNHIAEGTSV
1001: LINTEGYCIE DWMGVNRKVD GSGCIDLSGI LKVTEGYGKH VSFSVVSDCK EIFRKESQIE ERELRLVTER PESCTAGSNL TSLIFKVTDS DGSLDTSIHH
1101: DEKTRCIHTL SVESDSSSVE SGIRYAFVHG SCKIPSLSLP ETEGIFSVKV FHSRYPELHV NLEILITPAP TSERDDVGCS TPYSRMTSTP QSGMASATPF
1201: PRVGLERTPC SQFGVLAIRS PSLDGSCPSG VMDIPQYTKS LKQELSTYEA QQEEIDERIK CLEGEQEQAE QELITLQASL DSICAALPEC LSTRESMMKH
1301: IEEEHQDTAA SVFCSLTKKV PPPRSLFLSI KGGVFGIVAL LGSVASTSLS RILSAYLGKE KMLALVCKSS AYRASYAEYL RLQDEAARLG RSITNPPQVI
1401: CLNAYTPWRS GLVENDPQRR LDMVNPSLRN GGPIPGFKGY AVNMIELAVR DLDIGTNGHG LRETLFYGLF GDLQVYETGK DLEAALPYIK DGVDAVSLDG
1501: VISNRDGFLF SGCCVPDVHF PVTVPENHEK TLVKMEIKRD KKRKREEELV EERGLLRKIE KKMKKATKKY ERFSAMADSQ DRINKC
0001: MSSRRSVKRS LVLDDDDDED IFYNFKVLLP NGTSVKLTLK NPEPEISMQS FVNLVKKEYD NARKDCLLMS KRMKVDWNSG GKFHLESNGG KMKGIVRFAA
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRRTLVSSKT KESKKVFTLQ FKKEALIDNR SIVGKNWKTD GGMRDPSEEE MKLSPHGSFT
0301: KVEIFESEFD ISKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVAFQVNG EDLAEIAGGE VAITNLHSKG QFFSFQIRFT LFGGKRKGTA QEANARLKFV
0401: YFPIVQGKES IEKILQSLEE EGCKVSESFQ TFGRVSLRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFVDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKSTEK EKDDDVNIVI HREGKSVSYA HLEEKYQEWV LEMHNTHDEE AASGLDEAVL IVGSLDKKAL GILRDAVRVH KEVRRKEKTW KRGQNIKILR
0601: GAYAGIHNNN VYATIDYFLI EGFEDEAGGD TRILCRPIDR PENEGCKLSI IDGISKLEVQ SSLSLPITII DSGKCLPVDA NEWNRKLDKQ QEKAPSKIDL
0701: LDERDCRELK IDGELPIGNS VRAGKAPPKQ IVAVVRPACF TSLTPSKKLD QKNIVKMDGE EMVMVVKLKS SDKNISSQRL FPTSRKGISG LYIFSLGSKF
0801: PNLFKKAGTY NFSFSIGNSI KCNKTVVVRP SSKAARWELD DNLESLPCNV RVGSSLPPFR IACFDKYKNK IPFTSVPSLE VELEASPGFL IKIDKLETNL
0901: INDGLILKIE NMLVETDELD QIRPNYEATL EIRAMDNPFS VSVPCKVNPG PLKRVAVNNP KALENLLPDS TVEDFILELF DGYNNHVAEG TDVLIHIDGY
1001: RIEDWMGINR KVDSRGCINL SGILKVTEGY GKSVSLSVMS GNEVIFCKES QIDERQLRLV TELPDCCTAG TNLMNLIFQV TELDGSLDTS IHHDEKSGCF
1101: HTMSIESDSS SVESAIRYAF VHGSCKVSSL SLPENEGVFS CRVFHSRYPE LQMSIKIQVT SAPTSEREES GYSTPHSKTT PPPESGIPSI TNPWPTPCSQ
1201: FGVLAIRSSS LALSSETSLM DMAQYTEDLK EKINIDEERR VELEERLKCL QAQREHAEQE CSRLQASLEP LGAPFPECLS TKESMMKQIE EKHHDTAASV
1301: FCCLYRKAPP PRSLFLSQKG MFGVVALLGS VASTSLSRVL SEYLGKDTML SLVCKSSQFG PKSDEYRKFQ SEAASLGRSI TNRFLVICLD ATRPWRNGLV
1401: RNDPQKRLAM DNPYLPNGDP IPGFKGYAVN MIDLASEELD IQSSSGYGLR ETLFYGVFRE LQVYETAEHL EAALPHINGG DAVSLDGVIA RENGFIYSGC
1501: CTPEVHFPIT VTERQEKALV QLEITRDKKR KTEEMMTEEN RSLRRLVKKL KKANEKYQNF TAMADS
0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG
0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRRTLVSSKT KESKKVFTLQ FKKEALIDNR SIVGKNWKTD GGMRDPSEEE MKLSPHGSFT
0301: KVEIFESEFD ISKIYQLQCR LKDIYFPYIQ CDELSKTGRT ERPVAFQVNG EDLAEIAGGE VAITNLHSKG QFFSFQIRFT LFGGKRKGTA QEANARLKFV
0401: YFPIVQGKES IEKILQSLEE EGCKVSESFQ TFGRVSLRRL GRLLPEVRWD SIPFMQRGNR ASTLQKSCRR VKCFVDLDAG FSPTPSKTDL ASQNPFSVAL
0501: RNFGSKSTEK EKDDDVNIVI HREGKSVSYA HLEEKYQEWV LEMHNTHDEE AASGLDEAVL IVGSLDKKAL GILRDAVRVH KEVRRKEKTW KRGQNIKILR
0601: GAYAGIHNNN VYATIDYFLI EGFEDEAGGD TRILCRPIDR PENEGCKLSI IDGISKLEVQ SSLSLPITII DSGKCLPVDA NEWNRKLDKQ QEKAPSKIDL
0701: LDERDCRELK IDGELPIGNS VRAGKAPPKQ IVAVVRPACF TSLTPSKKLD QKNIVKMDGE EMVMVVKLKS SDKNISSQRL FPTSRKGISG LYIFSLGSKF
0801: PNLFKKAGTY NFSFSIGNSI KCNKTVVVRP SSKAARWELD DNLESLPCNV RVGSSLPPFR IACFDKYKNK IPFTSVPSLE VELEASPGFL IKIDKLETNL
0901: INDGLILKIE NMLVETDELD QIRPNYEATL EIRAMDNPFS VSVPCKVNPG PLKRVAVNNP KALENLLPDS TVEDFILELF DGYNNHVAEG TDVLIHIDGY
1001: RIEDWMGINR KVDSRGCINL SGILKVTEGY GKSVSLSVMS GNEVIFCKES QIDERQLRLV TELPDCCTAG TNLMNLIFQV TELDGSLDTS IHHDEKSGCF
1101: HTMSIESDSS SVESAIRYAF VHGSCKVSSL SLPENEGVFS CRVFHSRYPE LQMSIKIQVT SAPTSEREES GYSTPHSKTT PPPESGIPSI TNPWPTPCSQ
1201: FGVLAIRSSS LALSSETSLM DMAQYTEDLK EKINIDEERR VELEERLKCL QAQREHAEQE CSRLQASLEP LGAPFPECLS TKESMMKQIE EKHHDTAASV
1301: FCCLYRKAPP PRSLFLSQKG MFGVVALLGS VASTSLSRVL SEYLGKDTML SLVCKSSQFG PKSDEYRKFQ SEAASLGRSI TNRFLVICLD ATRPWRNGLV
1401: RNDPQKRLAM DNPYLPNGDP IPGFKGYAVN MIDLASEELD IQSSSGYGLR ETLFYGVFRE LQVYETAEHL EAALPHINGG DAVSLDGVIA RENGFIYSGC
1501: CTPEVHFPIT VTERQEKALV QLEITRDKKR KTEEMMTEEN RSLRRLVKKL KKANEKYQNF TAMADS
Arabidopsis Description
GMI1Structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 [Source:UniProtKB/Swiss-Prot;Acc:F4KFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.