Factsheet for TraesCS3B01G185200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	TraesCS2A01G373400.3	AT4G21670.1	18541146
AT3G49250.1	TraesCS2B01G390500.3	AT4G21670.1	18541146
AT3G49250.1	TraesCS2D01G369600.4	AT4G21670.1	18541146
AT3G49250.1	TraesCS6A01G235300.4	AT4G21670.1	18541146
AT3G49250.1	TraesCS6B01G264000.3	AT4G21670.1	18541146
AT3G49250.1	TraesCS6D01G218000.3	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G165900.1	Wheat	cytosol	98.03	98.03
TraesCS3A01G158200.1	Wheat	cytosol	98.03	98.03
HORVU3Hr1G057390.1	Barley	cytosol	86.62	82.46
Os01t0235200-02	Rice	cytosol	60.09	65.55
KXG31464	Sorghum	cytosol	56.14	63.21
Zm00001d053353_P001	Maize	cytosol	36.62	62.55
Solyc03g071800.1.1	Tomato	cytosol	20.83	58.64
Zm00001d013511_P001	Maize	cytosol	35.96	56.94
Zm00001d050870_P001	Maize	cytosol	24.56	55.72
GSMUA_Achr10P...	Banana	cytosol	39.25	52.49
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	8.11	51.39
Solyc03g071820.1.1	Tomato	cytosol	17.11	51.32
KRG97196	Soybean	cytosol	32.46	48.84
Solyc03g071790.1.1	Tomato	cytosol	23.03	45.06
VIT_16s0098g01820.t01	Wine grape	cytosol	40.57	42.92
Bra019588.1-P	Field mustard	cytosol	35.09	41.56
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	12.72	41.43
CDY00194	Canola	cytosol	35.31	39.85
CDX86984	Canola	cytosol	35.09	39.8
Solyc03g083210.2.1	Tomato	cytosol, nucleus	37.5	39.13
KRH64437	Soybean	cytosol, nucleus	37.28	38.99
CDY08119	Canola	cytosol, plastid	35.75	38.63
AT3G49250.1	Thale cress	cytosol	35.53	38.57
CDY05915	Canola	cytosol	35.31	38.33
Bra017998.1-P	Field mustard	cytosol	36.18	38.19
Solyc06g051990.2.1	Tomato	cytosol	37.06	36.19
KRH53504	Soybean	plastid	29.82	33.33
Solyc03g083170.2.1	Tomato	cytosol	37.72	22.11
TraesCS7B01G222800.1	Wheat	cytosol	23.9	6.92

Protein Annotations

MapMan:12.5.1.14.2	ncoils:Coil	GO:GO:0000419	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006306	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0031047	GO:GO:0040029	GO:GO:0042803	GO:GO:0070921	GO:GO:0080188	PANTHER:PTHR33566
PANTHER:PTHR33566:SF1	EnsemblPlantsGene:TraesCS3B01G185200	EnsemblPlants:TraesCS3B01G185200.1	:	:	:

Description

No Description!

Coordinates

chr3B:-:201027854..201033239

Molecular Weight (calculated)

49684.6 Da

IEP (calculated)

8.146

GRAVY (calculated)

-0.308

Length

456 amino acids

Sequence
(BLAST)

001: METPLTVQIV EFNTKVMQEE LKKLGLKVNH HEANITFLKS EIYAIEESIA DLTIKRGKKF VASSNGTSVQ EAEQRTIESI CNQDKTAASL ICQLKKRHSA
101: QISTMPMMKD ILGVVATLGK TNDDNLSSLL SEYLGIDNML GLVCKTYDGI KSLETYGTEG NIDKKSGIHG LGGSIGKFLH GRFTVFCLEN IRPFSGEVVI
201: DDPQRYLMLR KPRLPNGESP PGFLGFAVNM ILMDQAYLSC LTPHGHGLRE TLFYSLFSHL QVYKTTADLR RAIPFINDGA VSLDGGILRP NGSFCLGDRK
301: DVEVKFTVAL SSGDSNTPGS ITEVEEQVKL KNWEKERLVE DIKREEDLLK QVKDSFSNQK QQLVDYITQS PAAKRVQGSP TIRSPATPGS NPFAATPGRN
401: PFTSTPGSHP FATTPGGNPF AAATPGGHPI AATPGSHPIA ATPGNISFAV KPPHMR

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.