Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017373_P001 | |
| Zm00001d029743_P001 | |
| Zm00001d051242_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49250.1 | Zm00001d017373_P001 | AT4G21670.1 | 18541146 |
| AT3G49250.1 | Zm00001d029743_P001 | AT4G21670.1 | 18541146 |
| AT3G49250.1 | Zm00001d051242_P002 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050870_P001 | Maize | cytosol | 53.56 | 71.14 |
| Zm00001d013511_P001 | Maize | cytosol | 65.54 | 60.76 |
| KXG31464 | Sorghum | cytosol | 85.02 | 56.05 |
| Solyc03g071800.1.1 | Tomato | cytosol | 30.34 | 50.0 |
| Solyc11g032150.1.1 | Tomato | cytosol, extracellular, nucleus | 12.36 | 45.83 |
| Os01t0235200-02 | Rice | cytosol | 64.79 | 41.39 |
| Solyc03g071820.1.1 | Tomato | cytosol | 22.85 | 40.13 |
| Solyc03g071790.1.1 | Tomato | cytosol | 34.83 | 39.91 |
| TraesCS3D01G165900.1 | Wheat | cytosol | 62.55 | 36.62 |
| TraesCS3B01G185200.1 | Wheat | cytosol | 62.55 | 36.62 |
| TraesCS3A01G158200.1 | Wheat | cytosol | 62.55 | 36.62 |
| GSMUA_Achr10P... | Banana | cytosol | 46.44 | 36.36 |
| KRG97196 | Soybean | cytosol | 41.2 | 36.3 |
| HORVU3Hr1G057390.1 | Barley | cytosol | 62.92 | 35.07 |
| Solyc11g032160.1.1 | Tomato | endoplasmic reticulum, extracellular | 16.48 | 31.43 |
| Bra019588.1-P | Field mustard | cytosol | 41.95 | 29.09 |
| CDY00194 | Canola | cytosol | 42.32 | 27.97 |
| CDX86984 | Canola | cytosol | 41.95 | 27.86 |
| VIT_16s0098g01820.t01 | Wine grape | cytosol | 43.45 | 26.91 |
| AT3G49250.1 | Thale cress | cytosol | 41.95 | 26.67 |
| CDY05915 | Canola | cytosol | 41.57 | 26.43 |
| Bra017998.1-P | Field mustard | cytosol | 41.95 | 25.93 |
| KRH64437 | Soybean | cytosol, nucleus | 42.32 | 25.92 |
| CDY08119 | Canola | cytosol, plastid | 40.82 | 25.83 |
| Solyc03g083210.2.1 | Tomato | cytosol, nucleus | 41.2 | 25.17 |
| Solyc06g051990.2.1 | Tomato | cytosol | 43.45 | 24.84 |
| KRH53504 | Soybean | plastid | 32.58 | 21.32 |
| Solyc03g083170.2.1 | Tomato | cytosol | 40.82 | 14.01 |
| Zm00001d045357_P001 | Maize | cytosol | 3.75 | 12.82 |
Protein Annotations
| EnsemblPlants:Zm00001d053353_P001 | EnsemblPlants:Zm00001d053353_T001 | EnsemblPlantsGene:Zm00001d053353 | ncoils:Coil | PANTHER:PTHR33566 | PANTHER:PTHR33566:SF1 |
| ProteinID:AQK59307.1 | UniParc:UPI000842C6AD | UniProt:A0A1D6QP11 | MapMan:35.1 | : | : |
Description
Protein DEFECTIVE IN MERISTEM SILENCING 3
Coordinates
chr4:-:227250804..227252883
Molecular Weight (calculated)
30214.5 Da
IEP (calculated)
8.329
GRAVY (calculated)
-0.348
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMDNMLALV CKTFDGVKGL EKYDKDGIID KISGVHGLGR SVGKFLDGRF TVFCLENLRS FSGDVIIDDP QRKLILHRPR FPGGESHPGF LDFAINMIHL
101: DRAHLRFLTV SVHGLRETLF YTLFSHLQVY KNRTDIQSAL PLIKDGVVSL DGGLLRPNGS FCLGRSKNLE VKFVVTTDVS SLPENVAEME EQVKHKNWEK
201: EMVLEYMKRE EDLLKQVKEL YRKQKQELMD YVTQPAVTQT SCESPATHSP ATPGSNPFGA KLSNKWR
101: DRAHLRFLTV SVHGLRETLF YTLFSHLQVY KNRTDIQSAL PLIKDGVVSL DGGLLRPNGS FCLGRSKNLE VKFVVTTDVS SLPENVAEME EQVKHKNWEK
201: EMVLEYMKRE EDLLKQVKEL YRKQKQELMD YVTQPAVTQT SCESPATHSP ATPGSNPFGA KLSNKWR
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
Arabidopsis Description
DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.