Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017373_P001 | |
| Zm00001d029743_P001 | |
| Zm00001d051242_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49250.1 | Zm00001d017373_P001 | AT4G21670.1 | 18541146 |
| AT3G49250.1 | Zm00001d029743_P001 | AT4G21670.1 | 18541146 |
| AT3G49250.1 | Zm00001d051242_P002 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053353_P001 | Maize | cytosol | 71.14 | 53.56 |
| KXG31464 | Sorghum | cytosol | 80.6 | 40.0 |
| Zm00001d013511_P001 | Maize | cytosol | 56.72 | 39.58 |
| Os01t0235200-02 | Rice | cytosol | 58.71 | 28.23 |
| GSMUA_Achr10P... | Banana | cytosol | 42.29 | 24.93 |
| TraesCS3D01G165900.1 | Wheat | cytosol | 55.72 | 24.56 |
| TraesCS3B01G185200.1 | Wheat | cytosol | 55.72 | 24.56 |
| TraesCS3A01G158200.1 | Wheat | cytosol | 55.72 | 24.56 |
| HORVU3Hr1G057390.1 | Barley | cytosol | 58.21 | 24.43 |
| Solyc03g071820.1.1 | Tomato | cytosol | 16.42 | 21.71 |
| KRG97196 | Soybean | cytosol | 27.86 | 18.48 |
| Solyc03g071790.1.1 | Tomato | cytosol | 20.4 | 17.6 |
| VIT_16s0098g01820.t01 | Wine grape | cytosol | 35.32 | 16.47 |
| Solyc03g083210.2.1 | Tomato | cytosol, nucleus | 34.33 | 15.79 |
| Solyc06g051990.2.1 | Tomato | cytosol | 36.32 | 15.63 |
| KRH64437 | Soybean | cytosol, nucleus | 33.83 | 15.6 |
| Bra019588.1-P | Field mustard | cytosol | 29.85 | 15.58 |
| CDY00194 | Canola | cytosol | 30.35 | 15.1 |
| CDX86984 | Canola | cytosol | 29.85 | 14.93 |
| Solyc03g071800.1.1 | Tomato | cytosol | 11.94 | 14.81 |
| Bra017998.1-P | Field mustard | cytosol | 30.85 | 14.35 |
| AT3G49250.1 | Thale cress | cytosol | 29.85 | 14.29 |
| Solyc11g032160.1.1 | Tomato | endoplasmic reticulum, extracellular | 9.95 | 14.29 |
| CDY05915 | Canola | cytosol | 29.85 | 14.29 |
| CDY08119 | Canola | cytosol, plastid | 28.86 | 13.74 |
| KRH53504 | Soybean | plastid | 20.9 | 10.29 |
| Zm00001d045357_P001 | Maize | cytosol | 3.48 | 8.97 |
| Solyc03g083170.2.1 | Tomato | cytosol | 33.83 | 8.74 |
| Solyc11g032150.1.1 | Tomato | cytosol, extracellular, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d050870_P001 | EnsemblPlants:Zm00001d050870_T001 | EnsemblPlantsGene:Zm00001d050870 | ncoils:Coil | PANTHER:PTHR33566 | PANTHER:PTHR33566:SF1 |
| ProteinID:AQK53181.1 | SEG:seg | UniParc:UPI0008448C6C | UniProt:A0A1D6Q3P3 | MapMan:35.2 | : |
Description
NAC-transcription factor 58Putative NAC domain transcription factor superfamily protein
Coordinates
chr4:+:127748628..127751133
Molecular Weight (calculated)
22862.6 Da
IEP (calculated)
9.667
GRAVY (calculated)
-0.586
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSALKAEQ RTIRSILDRG KTTTTLGKVN NDNLSRLLTE YIGMDNMLAL VCKTYDGVKG LDKYDKDDII DKTSGVHGLG RAVGKFLYGR ITVFCLENLS
101: KNLKVKFVVT TDVSSLPENV VEMEEQVKRK NWQKEMVLED MKREEDLLKQ VKELYRKQKQ ELMDYVTQPA VTQTSRDSPA THSPATPGSN PFGAKLSNKW
201: W
101: KNLKVKFVVT TDVSSLPENV VEMEEQVKRK NWQKEMVLED MKREEDLLKQ VKELYRKQKQ ELMDYVTQPA VTQTSRDSPA THSPATPGSN PFGAKLSNKW
201: W
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
Arabidopsis Description
DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.