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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g111900.2.1
Solyc02g078550.2.1
Solyc04g082460.2.1
Solyc12g009110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G49250.1 Solyc04g082460.2.1 AT1G20630.1 21798944
AT3G49250.1 Solyc02g078550.2.1 AT4G21670.1 18541146
AT3G49250.1 Solyc01g111900.2.1 AT4G35160.1 21798944
AT3G49250.1 Solyc12g009110.1.1 AT4G35160.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g032150.1.1 Tomato cytosol, extracellular, nucleus 29.63 66.67
Solyc03g071790.1.1 Tomato cytosol 77.16 53.65
Solyc03g071820.1.1 Tomato cytosol 48.15 51.32
Solyc11g032160.1.1 Tomato endoplasmic reticulum, extracellular 38.89 45.0
Zm00001d053353_P001 Maize cytosol 50.0 30.34
Solyc03g083210.2.1 Tomato cytosol, nucleus 77.78 28.83
GSMUA_Achr10P... Banana cytosol 59.88 28.45
Zm00001d013511_P001 Maize cytosol 47.53 26.74
Bra019588.1-P Field mustard cytosol 57.41 24.16
Solyc06g051990.2.1 Tomato cytosol 67.28 23.34
VIT_16s0098g01820.t01 Wine grape cytosol 61.73 23.2
CDY00194 Canola cytosol 57.41 23.02
KRH64437 Soybean cytosol, nucleus 61.73 22.94
KRH53504 Soybean plastid 57.41 22.79
AT3G49250.1 Thale cress cytosol 57.41 22.14
CDX86984 Canola cytosol 54.94 22.14
Os01t0235200-02 Rice cytosol 56.17 21.77
KXG31464 Sorghum cytosol 54.32 21.73
CDY05915 Canola cytosol 54.94 21.19
CDY08119 Canola cytosol, plastid 54.94 21.09
Bra017998.1-P Field mustard cytosol 55.56 20.83
TraesCS3A01G158200.1 Wheat cytosol 58.64 20.83
TraesCS3B01G185200.1 Wheat cytosol 58.64 20.83
TraesCS3D01G165900.1 Wheat cytosol 58.64 20.83
HORVU3Hr1G057390.1 Barley cytosol 56.17 19.0
Solyc03g083170.2.1 Tomato cytosol 79.01 16.45
Zm00001d050870_P001 Maize cytosol 14.81 11.94
Solyc03g083130.1.1 Tomato cytosol 43.83 5.39
Protein Annotations
EnsemblPlants:Solyc03g071800.1.1EnsemblPlantsGene:Solyc03g071800.1PANTHER:PTHR33566PANTHER:PTHR33566:SF1UniParc:UPI0002767BE0UniProt:K4BHK9
MapMan:35.1:::::
Description
No Description!
Coordinates
chr3:-:18801189..18801774
Molecular Weight (calculated)
18029.1 Da
IEP (calculated)
9.327
GRAVY (calculated)
0.014
Length
162 amino acids
Sequence
(BLAST)
001: MIVVVCKTHD GLKELLTYGR KGPMNKSSGL HGVGASIGRP LDDRYLVIFL ENLRPYAGEF IVDDPQRRLA IRRKPRYVNE ETPHVFLGFA VNMINIDTAN
101: LYCVTRTGYG LRETLLYGLF SQLQVYKTSA DMMEALPFII DGAISLDGGI IKSGGIFSLG KR
Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
Arabidopsis Description
DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.