Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G091030.9 | |
| HORVU6Hr1G060230.12 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49250.1 | HORVU2Hr1G091030.9 | AT4G21670.1 | 18541146 |
| AT3G49250.1 | HORVU6Hr1G060230.12 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G165900.1 | Wheat | cytosol | 82.46 | 86.62 |
| TraesCS3B01G185200.1 | Wheat | cytosol | 82.46 | 86.62 |
| TraesCS3A01G158200.1 | Wheat | cytosol | 82.25 | 86.4 |
| Os01t0235200-02 | Rice | cytosol | 57.2 | 65.55 |
| KXG31464 | Sorghum | cytosol | 54.91 | 64.94 |
| Zm00001d053353_P001 | Maize | cytosol | 35.07 | 62.92 |
| Zm00001d013511_P001 | Maize | cytosol | 35.07 | 58.33 |
| Zm00001d050870_P001 | Maize | cytosol | 24.43 | 58.21 |
| Solyc03g071800.1.1 | Tomato | cytosol | 19.0 | 56.17 |
| Solyc03g071820.1.1 | Tomato | cytosol | 16.7 | 52.63 |
| GSMUA_Achr10P... | Banana | cytosol | 36.95 | 51.91 |
| Solyc11g032150.1.1 | Tomato | cytosol, extracellular, nucleus | 7.31 | 48.61 |
| KRG97196 | Soybean | cytosol | 30.69 | 48.51 |
| Solyc03g071790.1.1 | Tomato | cytosol | 20.88 | 42.92 |
| VIT_16s0098g01820.t01 | Wine grape | cytosol | 38.2 | 42.46 |
| Solyc11g032160.1.1 | Tomato | endoplasmic reticulum, extracellular | 11.9 | 40.71 |
| Bra019588.1-P | Field mustard | cytosol | 32.57 | 40.52 |
| Solyc03g083210.2.1 | Tomato | cytosol, nucleus | 36.33 | 39.82 |
| KRH64437 | Soybean | cytosol, nucleus | 35.91 | 39.45 |
| CDX86984 | Canola | cytosol | 32.99 | 39.3 |
| CDY00194 | Canola | cytosol | 32.99 | 39.11 |
| CDY08119 | Canola | cytosol, plastid | 33.82 | 38.39 |
| Bra017998.1-P | Field mustard | cytosol | 34.45 | 38.19 |
| AT3G49250.1 | Thale cress | cytosol | 33.4 | 38.1 |
| CDY05915 | Canola | cytosol | 33.19 | 37.86 |
| Solyc06g051990.2.1 | Tomato | cytosol | 36.12 | 37.05 |
| KRH53504 | Soybean | plastid | 29.23 | 34.31 |
| Solyc03g083170.2.1 | Tomato | cytosol | 36.74 | 22.62 |
| HORVU7Hr1G077060.4 | Barley | plastid | 12.73 | 6.38 |
Protein Annotations
| MapMan:12.5.1.14.2 | ncoils:Coil | GO:GO:0000419 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006306 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0031047 | GO:GO:0040029 | GO:GO:0042803 | GO:GO:0070921 | GO:GO:0080188 | EnsemblPlantsGene:HORVU3Hr1G057390 |
| EnsemblPlants:HORVU3Hr1G057390.1 | PANTHER:PTHR33566 | PANTHER:PTHR33566:SF1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr3H:+:430729579..430795530
Molecular Weight (calculated)
51942.5 Da
IEP (calculated)
8.375
GRAVY (calculated)
-0.273
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: PAASPAASFA RSDGPEIGHL LVLAAQPAER STAMEAPLTV QIVEFNTKVM QDELKKLGLK VNHHEANITF LKSEINAIEA SIADLTIKLG KKVVPSNNGT
101: SVQEAEQRTI ESICNQDKTA ASLICQLKKR HSAQISTMPM MKDIIGVVAT LGKVNDDNLS SLLSEYLGID NMLGLVCKTY DGIKSLETYG KEGIIDKKSG
201: IHGLGGSIGK FLHGRFTVFC LENIRPFSGE VMIHDPQRYL MLHKPRLPNG ESPPGFLGFA VNMIHMDQTY LSCFTPHGHG LRETLLYSLF SHLQVYKTTA
301: DLRRAIPLIN DGAVSLDGSI LRPNGSFCLG DRKDVEVKFT VALSSGDSNT PGSITEMEEQ FKLKNWEKER LVEDMKREED LLKQVKGSFG NQKQQLVDYI
401: TQSPAAKRVQ GSPTIRSPAT PGSNPFAATP GRNPFTSTPG GHPFATTPGG HPIAATPGSH PIAATPGNIS FAVKPPHMR
101: SVQEAEQRTI ESICNQDKTA ASLICQLKKR HSAQISTMPM MKDIIGVVAT LGKVNDDNLS SLLSEYLGID NMLGLVCKTY DGIKSLETYG KEGIIDKKSG
201: IHGLGGSIGK FLHGRFTVFC LENIRPFSGE VMIHDPQRYL MLHKPRLPNG ESPPGFLGFA VNMIHMDQTY LSCFTPHGHG LRETLLYSLF SHLQVYKTTA
301: DLRRAIPLIN DGAVSLDGSI LRPNGSFCLG DRKDVEVKFT VALSSGDSNT PGSITEMEEQ FKLKNWEKER LVEDMKREED LLKQVKGSFG NQKQQLVDYI
401: TQSPAAKRVQ GSPTIRSPAT PGSNPFAATP GRNPFTSTPG GHPFATTPGG HPIAATPGSH PIAATPGNIS FAVKPPHMR
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
Arabidopsis Description
DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.