Factsheet for Solyc03g083210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g111900.2.1
Solyc02g078550.2.1
Solyc04g082460.2.1
Solyc12g009110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	Solyc04g082460.2.1	AT1G20630.1	21798944
AT3G49250.1	Solyc02g078550.2.1	AT4G21670.1	18541146
AT3G49250.1	Solyc01g111900.2.1	AT4G35160.1	21798944
AT3G49250.1	Solyc12g009110.1.1	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g071800.1.1	Tomato	cytosol	28.83	77.78
Solyc03g071820.1.1	Tomato	cytosol	26.09	75.0
Solyc03g071790.1.1	Tomato	cytosol	36.16	67.81
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	10.07	61.11
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	17.85	55.71
Solyc06g051990.2.1	Tomato	cytosol	57.67	53.96
VIT_16s0098g01820.t01	Wine grape	cytosol	52.17	52.9
GSMUA_Achr10P...	Banana	cytosol	39.59	50.73
KRH64437	Soybean	cytosol, nucleus	46.45	46.56
Bra019588.1-P	Field mustard	cytosol	40.73	46.23
AT3G49250.1	Thale cress	cytosol	43.48	45.24
CDY00194	Canola	cytosol	40.96	44.31
CDX86984	Canola	cytosol	39.82	43.28
CDY05915	Canola	cytosol	40.5	42.14
CDY08119	Canola	cytosol, plastid	40.5	41.94
KXG31464	Sorghum	cytosol	38.67	41.73
Zm00001d053353_P001	Maize	cytosol	25.17	41.2
KRH53504	Soybean	plastid	38.44	41.18
Os01t0235200-02	Rice	cytosol	39.36	41.15
Zm00001d013511_P001	Maize	cytosol	27.0	40.97
Bra017998.1-P	Field mustard	cytosol	40.5	40.97
TraesCS3A01G158200.1	Wheat	cytosol	39.36	37.72
TraesCS3B01G185200.1	Wheat	cytosol	39.13	37.5
Solyc03g083170.2.1	Tomato	cytosol	66.59	37.4
TraesCS3D01G165900.1	Wheat	cytosol	38.67	37.06
HORVU3Hr1G057390.1	Barley	cytosol	39.82	36.33
Zm00001d050870_P001	Maize	cytosol	15.79	34.33
Solyc03g083130.1.1	Tomato	cytosol	27.23	9.04

Protein Annotations

EnsemblPlants:Solyc03g083210.2.1	EnsemblPlantsGene:Solyc03g083210.2	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1	SEG:seg	UniParc:UPI0002768936
UniProt:K4BI97	MapMan:12.5.1.14.2	:	:	:	:

Description

No Description!

Coordinates

chr3:+:53049663..53064618

Molecular Weight (calculated)

48672.0 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.450

Length

437 amino acids

Sequence
(BLAST)

001: MDGGQRRMSI DNEKLPISPK ALGVHDPSLN QVGHSNSPTF AANRDPIQNG SAEAVICNSK KLEDAMQEFG LKIKHHEDNV KYLKAVKNEL DDSILDIRVA
101: LGTTKSASET GSENKESSNG QNEEETIEQI LSFDKSAAAI CVQLQKRSGT QITQIPFMKD IIGIVALLGK VDDDNLSRSL SDYLGLETML GVVFKTRDGV
201: KALETYDREG RINKSSGFHG LGASIGRPLD DRYLVICLED LRPYTGKFIA DDPQRRLDIK KPRYLNEETP PGFLGFAVNM INIDTANLYC VTSTGYGLRE
301: TLFYRLFSRL QVYKTRADML QALPLIADGA ISLDGGIIKS SGISSLGERE VKIKFPMSSG RPNVPENYYE TEIRLKELQW KRARFVDDLQ REQTLLDHAK
401: FNFEIKKQDF VKFLARSSSY ASAPQFPAGG ERSTPIS

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.