Factsheet for Solyc03g071790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 2
cytosol 3
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g111900.2.1
Solyc02g078550.2.1
Solyc04g082460.2.1
Solyc12g009110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	Solyc04g082460.2.1	AT1G20630.1	21798944
AT3G49250.1	Solyc02g078550.2.1	AT4G21670.1	18541146
AT3G49250.1	Solyc01g111900.2.1	AT4G35160.1	21798944
AT3G49250.1	Solyc12g009110.1.1	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g071800.1.1	Tomato	cytosol	53.65	77.16
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	18.45	59.72
Solyc03g071820.1.1	Tomato	cytosol	32.62	50.0
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	26.61	44.29
Solyc03g083210.2.1	Tomato	cytosol, nucleus	67.81	36.16
Zm00001d053353_P001	Maize	cytosol	39.91	34.83
GSMUA_Achr10P...	Banana	cytosol	49.36	33.72
Bra019588.1-P	Field mustard	cytosol	48.93	29.61
Solyc06g051990.2.1	Tomato	cytosol	57.51	28.69
CDY00194	Canola	cytosol	48.93	28.22
Zm00001d013511_P001	Maize	cytosol	34.76	28.12
AT3G49250.1	Thale cress	cytosol	49.36	27.38
CDX86984	Canola	cytosol	47.21	27.36
VIT_16s0098g01820.t01	Wine grape	cytosol	50.21	27.15
CDY08119	Canola	cytosol, plastid	47.64	26.3
CDY05915	Canola	cytosol	46.78	25.95
Bra017998.1-P	Field mustard	cytosol	47.64	25.69
KRH64437	Soybean	cytosol, nucleus	47.64	25.46
KXG31464	Sorghum	cytosol	42.92	24.69
Os01t0235200-02	Rice	cytosol	44.21	24.64
Solyc03g083170.2.1	Tomato	cytosol	81.12	24.29
TraesCS3B01G185200.1	Wheat	cytosol	45.06	23.03
TraesCS3A01G158200.1	Wheat	cytosol	44.64	22.81
TraesCS3D01G165900.1	Wheat	cytosol	44.64	22.81
KRH53504	Soybean	plastid	36.91	21.08
HORVU3Hr1G057390.1	Barley	cytosol	42.92	20.88
Zm00001d050870_P001	Maize	cytosol	17.6	20.4
Solyc03g083130.1.1	Tomato	cytosol	33.48	5.92

Protein Annotations

EnsemblPlants:Solyc03g071790.1.1	EnsemblPlantsGene:Solyc03g071790.1	ncoils:Coil	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1	UniParc:UPI0002767BDF
UniProt:K4BHK8	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3:-:18756153..18758001

Molecular Weight (calculated)

26455.4 Da

IEP (calculated)

10.321

GRAVY (calculated)

-0.245

Length

233 amino acids

Sequence
(BLAST)

001: MLAVVCKTHD GLKALLTSDK KGPTNTSSRL HGVGSSIGGP LHRYLVICLE NLIPYTGEFI ADDPKRRLAI RRKPRYVNKE TSPGFLGFAV NMINIDTANL
101: YCVISNGHVL RETLFSGLVA QLQVYKTRAD MMQALPFITN GDISLDGGII KSGCIFSLGK REVQIKFPKS FGRSYLRKSY IKSEIRMKEL KWERVRCVED
201: LEREQTLLTN AKNNFKIRKE EFVKFLSQRS SYL

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.