Factsheet for Zm00001d013511_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017373_P001
Zm00001d029743_P001
Zm00001d051242_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	Zm00001d017373_P001	AT4G21670.1	18541146
AT3G49250.1	Zm00001d029743_P001	AT4G21670.1	18541146
AT3G49250.1	Zm00001d051242_P002	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053353_P001	Maize	cytosol	60.76	65.54
Zm00001d050870_P001	Maize	cytosol	39.58	56.72
KXG31464	Sorghum	cytosol	76.04	54.07
Solyc03g071800.1.1	Tomato	cytosol	26.74	47.53
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	11.11	44.44
Os01t0235200-02	Rice	cytosol	61.81	42.58
Solyc03g071820.1.1	Tomato	cytosol	21.88	41.45
GSMUA_Achr10P...	Banana	cytosol	48.26	40.76
KRG97196	Soybean	cytosol	41.32	39.27
TraesCS3D01G165900.1	Wheat	cytosol	57.29	36.18
TraesCS3A01G158200.1	Wheat	cytosol	57.29	36.18
TraesCS3B01G185200.1	Wheat	cytosol	56.94	35.96
HORVU3Hr1G057390.1	Barley	cytosol	58.33	35.07
Solyc03g071790.1.1	Tomato	cytosol	28.12	34.76
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	16.67	34.29
Bra019588.1-P	Field mustard	cytosol	40.97	30.65
VIT_16s0098g01820.t01	Wine grape	cytosol	45.83	30.63
CDY00194	Canola	cytosol	41.32	29.46
CDX86984	Canola	cytosol	40.97	29.35
Bra017998.1-P	Field mustard	cytosol	42.71	28.47
KRH64437	Soybean	cytosol, nucleus	43.06	28.44
CDY08119	Canola	cytosol, plastid	41.67	28.44
CDY05915	Canola	cytosol	40.62	27.86
AT3G49250.1	Thale cress	cytosol	39.58	27.14
Solyc03g083210.2.1	Tomato	cytosol, nucleus	40.97	27.0
KRH53504	Soybean	plastid	37.5	26.47
Solyc06g051990.2.1	Tomato	cytosol	42.36	26.12
Zm00001d045357_P001	Maize	cytosol	4.17	15.38
Solyc03g083170.2.1	Tomato	cytosol	40.97	15.17

Protein Annotations

EnsemblPlants:Zm00001d013511_P001	EnsemblPlants:Zm00001d013511_T001	EnsemblPlantsGene:Zm00001d013511	ncoils:Coil	PANTHER:PTHR33566	PANTHER:PTHR33566:SF1
ProteinID:AQK63743.1	UniParc:UPI000842665E	UniProt:A0A1D6GK69	MapMan:35.1	:	:

Description

Protein DEFECTIVE IN MERISTEM SILENCING 3

Coordinates

chr5:+:13212888..13216542

Molecular Weight (calculated)

32305.9 Da

IEP (calculated)

7.151

GRAVY (calculated)

-0.199

Length

288 amino acids

Sequence
(BLAST)

001: MDCASMMKEV QTPHFHTLFH NASISVLKLY FFSVKLGNYH SSVAAVVNND TSAQEDEQHT IRSILDQGKT TTTIGKVNND NLSRLLTEYL GMDNMLALVC
101: KTYDGVKGLE KYDKDDIIDK TSGIHGLGRS VGKFVDGRFI VFCLENLRPF SSDVIIDDPQ RKLILHRPRL PGGESPPGFL DFVVNMIHLD RAHLRFLIAS
201: GHGLRETLFS HLQVYKTRTN IQSSLPLIKD GVVSLDGGLL RPNGSFCLGH SKNLEVKFAV TTDVSSLLEN VVEMEEQVKR KNWEKEMV

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.