Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49250.1 | EES05486 | AT4G21670.1 | 18541146 |
| AT3G49250.1 | KXG26770 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053353_P001 | Maize | cytosol | 56.05 | 85.02 |
| Zm00001d050870_P001 | Maize | cytosol | 40.0 | 80.6 |
| Zm00001d013511_P001 | Maize | cytosol | 54.07 | 76.04 |
| Os01t0235200-02 | Rice | cytosol | 70.86 | 68.66 |
| GSMUA_Achr10P... | Banana | cytosol | 47.9 | 56.89 |
| TraesCS3D01G165900.1 | Wheat | cytosol | 63.46 | 56.36 |
| TraesCS3A01G158200.1 | Wheat | cytosol | 63.46 | 56.36 |
| TraesCS3B01G185200.1 | Wheat | cytosol | 63.21 | 56.14 |
| HORVU3Hr1G057390.1 | Barley | cytosol | 64.94 | 54.91 |
| Solyc03g071800.1.1 | Tomato | cytosol | 21.73 | 54.32 |
| Solyc11g032150.1.1 | Tomato | cytosol, extracellular, nucleus | 9.38 | 52.78 |
| Solyc03g071820.1.1 | Tomato | cytosol | 19.01 | 50.66 |
| KRG97196 | Soybean | cytosol | 36.79 | 49.17 |
| VIT_16s0098g01820.t01 | Wine grape | cytosol | 45.93 | 43.16 |
| Solyc03g071790.1.1 | Tomato | cytosol | 24.69 | 42.92 |
| Bra019588.1-P | Field mustard | cytosol | 39.51 | 41.56 |
| KRH64437 | Soybean | cytosol, nucleus | 44.2 | 41.05 |
| CDX86984 | Canola | cytosol | 40.0 | 40.3 |
| Solyc11g032160.1.1 | Tomato | endoplasmic reticulum, extracellular | 13.83 | 40.0 |
| CDY00194 | Canola | cytosol | 39.75 | 39.85 |
| AT3G49250.1 | Thale cress | cytosol | 40.49 | 39.05 |
| Solyc03g083210.2.1 | Tomato | cytosol, nucleus | 41.73 | 38.67 |
| Bra017998.1-P | Field mustard | cytosol | 40.74 | 38.19 |
| CDY08119 | Canola | cytosol, plastid | 39.75 | 38.15 |
| CDY05915 | Canola | cytosol | 39.51 | 38.1 |
| Solyc06g051990.2.1 | Tomato | cytosol | 41.73 | 36.19 |
| KRH53504 | Soybean | plastid | 35.8 | 35.54 |
| Solyc03g083170.2.1 | Tomato | cytosol | 40.74 | 21.21 |
| OQU84844 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 24.69 | 6.8 |
Protein Annotations
| MapMan:12.5.1.14.2 | UniProt:A0A1B6Q0M1 | ncoils:Coil | GO:GO:0000419 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006306 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0031047 | GO:GO:0040029 | GO:GO:0042803 | GO:GO:0070921 | GO:GO:0080188 |
| EnsemblPlants:KXG31464 | ProteinID:KXG31464 | ProteinID:KXG31464.1 | PANTHER:PTHR33566 | PANTHER:PTHR33566:SF1 | EnsemblPlantsGene:SORBI_3003G004800 |
| UniParc:UPI00081AB2CE | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:445749..449556
Molecular Weight (calculated)
45060.3 Da
IEP (calculated)
7.661
GRAVY (calculated)
-0.362
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPSLPSQI VQFNSKAMED KLKRLALKVG HHEDNIRFLK SQLNAVEDAC IDLGIKLGNY HSSVAAVMNN DTSAQEAEQR TIRSILDQDT TAAGIICQLK
101: VRHHELASKM TLMKGILGFV ATLGKVNNDN LSRLLTEYLG MDNMLALVCK TYDGVKDLEK YDKDGIIDKT SGVHGLGRSV GKFLDGRFTV FCLENLRPFS
201: GDINIGDPQR KLILHRPRLP GGESPPGFLD FAVNMIHLDR AHLSCLTASG HGLRETLFYT LFSHLQVYKT RADIQSALPL IKDGAVSLDG GILRPNGSFC
301: LGDSKNLEVR FPVNIEVSSL PENIAEMEEQ VKLKNWEKER VLEDMKREED LLKQVKELYR KQKQELMDYL THPAVAQTSR DSPTTHSPTT PGSNPFGAKP
401: SHKGW
101: VRHHELASKM TLMKGILGFV ATLGKVNNDN LSRLLTEYLG MDNMLALVCK TYDGVKDLEK YDKDGIIDKT SGVHGLGRSV GKFLDGRFTV FCLENLRPFS
201: GDINIGDPQR KLILHRPRLP GGESPPGFLD FAVNMIHLDR AHLSCLTASG HGLRETLFYT LFSHLQVYKT RADIQSALPL IKDGAVSLDG GILRPNGSFC
301: LGDSKNLEVR FPVNIEVSSL PENIAEMEEQ VKLKNWEKER VLEDMKREED LLKQVKELYR KQKQELMDYL THPAVAQTSR DSPTTHSPTT PGSNPFGAKP
401: SHKGW
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
Arabidopsis Description
DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.