Factsheet for VIT_16s0098g01820.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0370g00040.t01
VIT_00s0426g00040.t01
VIT_00s0663g00030.t01
VIT_00s0726g00020.t01
VIT_02s0025g01660.t01
VIT_03s0038g03080.t01
VIT_03s0038g03090.t01
VIT_15s0046g00380.t01
VIT_15s0046g00390.t01
VIT_15s0046g00400.t01
VIT_15s0046g00410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49250.1	VIT_00s0426g00040.t01	AT3G61790.1	21798944
AT3G49250.1	VIT_00s0663g00030.t01	AT3G61790.1	21798944
AT3G49250.1	VIT_00s0726g00020.t01	AT3G61790.1	21798944
AT3G49250.1	VIT_02s0025g01660.t01	AT3G61790.1	21798944
AT3G49250.1	VIT_15s0046g00380.t01	AT3G61790.1	21798944
AT3G49250.1	VIT_15s0046g00390.t01	AT3G61790.1	21798944
AT3G49250.1	VIT_15s0046g00400.t01	AT3G61790.1	21798944
AT3G49250.1	VIT_15s0046g00410.t01	AT3G61790.1	21798944
AT3G49250.1	VIT_00s0370g00040.t01	AT4G21670.1	18541146
AT3G49250.1	VIT_03s0038g03080.t01	AT4G35160.1	21798944
AT3G49250.1	VIT_03s0038g03090.t01	AT4G35160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g071800.1.1	Tomato	cytosol	23.2	61.73
Solyc03g071820.1.1	Tomato	cytosol	20.42	57.89
KRH64437	Soybean	cytosol, nucleus	58.47	57.8
GSMUA_Achr10P...	Banana	cytosol	45.48	57.48
AT3G49250.1	Thale cress	cytosol	51.97	53.33
Solyc11g032150.1.1	Tomato	cytosol, extracellular, nucleus	8.82	52.78
Solyc03g083210.2.1	Tomato	cytosol, nucleus	52.9	52.17
Bra019588.1-P	Field mustard	cytosol	45.48	50.91
KRH53504	Soybean	plastid	47.56	50.25
Solyc03g071790.1.1	Tomato	cytosol	27.15	50.21
CDY00194	Canola	cytosol	46.4	49.51
CDX86984	Canola	cytosol	45.94	49.25
CDY05915	Canola	cytosol	47.56	48.81
CDY08119	Canola	cytosol, plastid	46.87	47.87
Solyc06g051990.2.1	Tomato	cytosol	51.51	47.54
Bra017998.1-P	Field mustard	cytosol	46.4	46.3
KXG31464	Sorghum	cytosol	43.16	45.93
Zm00001d013511_P001	Maize	cytosol	30.63	45.83
Solyc11g032160.1.1	Tomato	endoplasmic reticulum, extracellular	14.85	45.71
Os01t0235200-02	Rice	cytosol	44.32	45.69
Zm00001d053353_P001	Maize	cytosol	26.91	43.45
TraesCS3A01G158200.1	Wheat	cytosol	42.92	40.57
TraesCS3B01G185200.1	Wheat	cytosol	42.92	40.57
TraesCS3D01G165900.1	Wheat	cytosol	42.92	40.57
HORVU3Hr1G057390.1	Barley	cytosol	42.46	38.2
Zm00001d050870_P001	Maize	cytosol	16.47	35.32
Solyc03g083170.2.1	Tomato	cytosol	47.33	26.22
VIT_16s0098g01810.t01	Wine grape	cytosol	25.75	6.36

Protein Annotations

EntrezGene:100257134	wikigene:100257134	MapMan:12.5.1.14.2	ProteinID:CCB48046	ProteinID:CCB48046.1	ncoils:Coil
UniProt:F6H782	EMBL:FN595247	GO:GO:0000166	GO:GO:0000419	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031047	GO:GO:0040029	GO:GO:0042803
GO:GO:0051276	GO:GO:0070921	GO:GO:0080188	EntrezGene:LOC100257134	wikigene:LOC100257134	PANTHER:PTHR33566
PANTHER:PTHR33566:SF1	TIGR:TC61606	TIGR:TC71127	UniParc:UPI0001985059	ArrayExpress:VIT_16s0098g01820	EnsemblPlantsGene:VIT_16s0098g01820
EnsemblPlants:VIT_16s0098g01820.t01	unigene:Vvi.2330	RefSeq:XP_002277586	RefSeq:XP_002277586.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:21907951..21912948

Molecular Weight (calculated)

48284.8 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.394

Length

431 amino acids

Sequence
(BLAST)

001: MFQPHNQLSI QTKPLAIQEP SALMHVDPNN SFGAARDEMH NGGLSKAESA VNNSKKLQDE LQTLGFKIKQ HEDNIKYLKT QKDNLDGSIL DLQVTLGKYC
101: SSSIPTMENE ALSKSRSENE TVEQILKYEK SAAAILCQLK IRHGSQASHL TLAKDVLGIV ATLGKVDDEN LSRLFSEYLG LETMMAIVCK TYEGVKTLET
201: YDFEGGINKH SGLHGLGSSI GRHLDGRFRI ICLEHLRPYA GDFVADDTQR RLDLLKPRLP NGECPPGFLG FAVNMINVDS ANILCLTSSG CGLRETLFYN
301: LFSRLQVYRT RAEMLLALPC ITDGALSLDG GMIKTAGVFS LGSREDVEVR FPKSSGSNLP LEYFETEKEL TEVNWKREKV EEDIQREQSL LNHINYTFRI
401: KKQAFIKYLA DSSPYGIQQQ IPGERERLTQ R

Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)

001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR

Arabidopsis Description

DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.