Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 5
- nucleus 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g02240.t01 | |
| VIT_17s0000g07490.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61790.1 | VIT_17s0000g07490.t01 | AT1G19010.1 | 21798944 |
| AT3G61790.1 | VIT_01s0010g02240.t01 | AT3G26050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_15s0046g00400.t01 | Wine grape | cytosol | 88.8 | 79.26 |
| VIT_15s0046g00390.t01 | Wine grape | nucleus | 79.25 | 71.0 |
| VIT_00s0663g00030.t01 | Wine grape | cytosol, extracellular, nucleus | 26.97 | 61.32 |
| VIT_00s0726g00020.t01 | Wine grape | extracellular | 29.05 | 60.87 |
| VIT_15s0046g00410.t01 | Wine grape | cytosol | 44.81 | 59.67 |
| VIT_15s0046g00380.t01 | Wine grape | cytosol | 51.04 | 49.4 |
| Solyc03g083270.2.1 | Tomato | cytosol | 55.19 | 42.49 |
| KRG97189 | Soybean | nucleus | 55.19 | 42.36 |
| PGSC0003DMT400023575 | Potato | cytosol | 55.19 | 42.36 |
| PGSC0003DMT400050427 | Potato | cytosol | 55.19 | 42.22 |
| Solyc06g051980.2.1 | Tomato | cytosol | 55.19 | 42.22 |
| VIT_02s0025g01660.t01 | Wine grape | cytosol | 54.77 | 41.77 |
| Solyc10g009420.2.1 | Tomato | nucleus | 54.77 | 41.77 |
| CDY14268 | Canola | nucleus | 55.19 | 41.56 |
| Bra010392.1-P | Field mustard | nucleus | 55.19 | 41.56 |
| GSMUA_Achr6P22600_001 | Banana | cytosol | 53.94 | 41.53 |
| PGSC0003DMT400018049 | Potato | nucleus | 56.85 | 41.14 |
| Solyc05g050580.2.1 | Tomato | nucleus | 56.43 | 41.09 |
| CDX92848 | Canola | nucleus | 51.87 | 40.98 |
| Bra003473.1-P | Field mustard | nucleus | 53.94 | 40.88 |
| PGSC0003DMT400048586 | Potato | mitochondrion | 54.36 | 40.81 |
| CDX89221 | Canola | nucleus | 54.36 | 40.68 |
| CDY19018 | Canola | nucleus | 54.36 | 40.68 |
| Bra026301.1-P | Field mustard | nucleus | 54.36 | 40.68 |
| VIT_16s0098g01850.t01 | Wine grape | cytosol | 55.19 | 40.67 |
| VIT_06s0004g01130.t01 | Wine grape | cytosol | 51.87 | 40.58 |
| KRH68916 | Soybean | nucleus | 55.19 | 40.55 |
| CDX97399 | Canola | nucleus | 53.94 | 40.5 |
| AT3G61790.1 | Thale cress | nucleus | 54.77 | 40.49 |
| CDY25077 | Canola | nucleus | 53.94 | 40.25 |
| CDX67865 | Canola | nucleus | 53.94 | 40.25 |
| VIT_13s0139g00150.t01 | Wine grape | cytosol, nucleus, plastid | 50.62 | 40.0 |
| Bra014421.1-P | Field mustard | cytosol | 53.11 | 40.0 |
| AT4G27880.1 | Thale cress | nucleus | 53.94 | 39.76 |
| Solyc01g096020.2.1 | Tomato | cytosol | 54.36 | 39.34 |
| CDX89132 | Canola | cytosol | 53.11 | 39.26 |
| CDY43950 | Canola | nucleus | 52.7 | 39.08 |
| PGSC0003DMT400000649 | Potato | cytosol | 54.36 | 38.99 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 50.62 | 38.73 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 52.28 | 36.21 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 12.45 | 15.0 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | ProteinID:CCB57295 | ProteinID:CCB57295.1 |
| UniProt:F6HRI7 | EMBL:FN596019 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF34 |
| InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0002109147 | ArrayExpress:VIT_00s0426g00040 | EnsemblPlantsGene:VIT_00s0426g00040 |
| EnsemblPlants:VIT_00s0426g00040.t01 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F6HRI7]
Coordinates
chrUn:-:28706457..28707387
Molecular Weight (calculated)
27551.7 Da
IEP (calculated)
7.943
GRAVY (calculated)
-0.012
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MFETKLLFLQ CHNGHTLCSS CKARVLNKCP TCRQQVGDIR CLALEKMAKS LELHCKNEEF GCFEIIPYHT KLMHEDSCNF RPYSCPWYGC LCSTVGDIPL
101: LVSHLTDYHK AVMLYGCKFK LEFLIEGLYK YQSYKWDVTI INCFDKHFFL HAKAFLIGST PVYMAFLSLI GNQAEAGNYS YNLEIGGNGR KLTFEGILRS
201: IRESKRSSLE SADNLIVLGD MAFSLGGETR MPMLWVTGRI W
101: LVSHLTDYHK AVMLYGCKFK LEFLIEGLYK YQSYKWDVTI INCFDKHFFL HAKAFLIGST PVYMAFLSLI GNQAEAGNYS YNLEIGGNGR KLTFEGILRS
201: IRESKRSSLE SADNLIVLGD MAFSLGGETR MPMLWVTGRI W
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.