Factsheet for VIT_13s0139g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13409	Soybean	cytosol	91.15	91.45
PGSC0003DMT400054414	Potato	cytosol	89.84	89.84
Os03t0356414-01	Rice	cytosol	88.2	89.37
EER92255	Sorghum	nucleus	87.87	88.74
Os07t0659800-01	Rice	cytosol	87.87	88.74
EER97677	Sorghum	cytosol	87.54	88.41
Zm00001d029203_P002	Maize	cytosol	87.54	88.41
TraesCS4A01G148400.2	Wheat	nucleus	87.21	88.37
TraesCS4D01G164700.1	Wheat	nucleus	87.21	88.37
Zm00001d022401_P002	Maize	cytosol	87.21	88.08
TraesCS2D01G131700.1	Wheat	cytosol	84.92	86.05
TraesCS2A01G129000.1	Wheat	plasma membrane	84.92	81.19
Solyc02g069880.2.1	Tomato	cytosol	53.11	80.2
GSMUA_Achr3P08700_001	Banana	cytosol	89.84	79.42
KRH20763	Soybean	nucleus	90.82	79.37
TraesCS2B01G151100.1	Wheat	plasma membrane	84.92	74.0
VIT_02s0025g01660.t01	Wine grape	cytosol	72.79	70.25
VIT_08s0007g06740.t01	Wine grape	cytosol	72.13	69.84
VIT_16s0098g01850.t01	Wine grape	cytosol	73.44	68.5
VIT_06s0004g01130.t01	Wine grape	cytosol	68.85	68.18
HORVU2Hr1G022590.1	Barley	nucleus	84.59	68.07
VIT_15s0046g00400.t01	Wine grape	cytosol	46.23	52.22
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.0	50.62
VIT_15s0046g00390.t01	Wine grape	nucleus	44.26	50.19
TraesCS1A01G371400.1	Wheat	cytosol	31.15	47.5
VIT_15s0046g00410.t01	Wine grape	cytosol	26.89	45.3
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.41	44.34
VIT_00s0726g00020.t01	Wine grape	extracellular	16.39	43.48
VIT_15s0046g00380.t01	Wine grape	cytosol	34.75	42.57
VIT_14s0006g01870.t01	Wine grape	cytosol	13.77	21.0

Protein Annotations

EntrezGene:100244678	wikigene:100244678	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom
UniProt:A5CAJ5	EMBL:AM488253	ProteinID:CAN68850	ProteinID:CAN68850.1	ProteinID:CBI35133	ProteinID:CBI35133.3
EMBL:FN596255	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0055114	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EntrezGene:LOC100244678	wikigene:LOC100244678
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	TIGR:TC65689	InterPro:TRAF-like	UniParc:UPI0001522957	ArrayExpress:VIT_13s0139g00150
EnsemblPlantsGene:VIT_13s0139g00150	EnsemblPlants:VIT_13s0139g00150.t01	RefSeq:XP_002272130	RefSeq:XP_002272130.1	RefSeq:XP_010659160.1	RefSeq:XP_010659161.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A5CAJ5]

Coordinates

chr13:+:20387237..20393292

Molecular Weight (calculated)

34750.6 Da

IEP (calculated)

7.624

GRAVY (calculated)

-0.405

Length

305 amino acids

Sequence
(BLAST)

001: MASGNTYFDD MRSKSEVIDP PQSEDMMEVS EHVNDPAQTT LKPNVTVSSS VRELLECPVC LNAMYPPIHQ CSNGHTLCSG CKPRVHNRCP TCRHELGNIR
101: CLALEKVAAS LELPCKYQSF GCLGIYPYYS KLKHESQCVY RPYNCPYAGS ECTVIGDIPY LVAHLKDDHK VDMHNGSTFN HRYVKSNPHE VENATWMLTV
201: FSCFGQYFCL HFEAFQLGMA PVYIAFLRFM GDDNEAKNYS YSLEVGGTGR KMIWQGVPRS IRDSHRKVRD SFDGLIIQRN MALFFSGGDR KELKLRVTGR
301: IWKEQ

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.