Factsheet for GSMUA_Achr3P08700_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	79.42	89.84
EER97677	Sorghum	cytosol	77.39	88.41
Os07t0659800-01	Rice	cytosol	77.39	88.41
Zm00001d022401_P002	Maize	cytosol	76.81	87.75
Os03t0356414-01	Rice	cytosol	76.52	87.71
EER92255	Sorghum	nucleus	76.52	87.42
Zm00001d029203_P002	Maize	cytosol	75.65	86.42
TraesCS4D01G164700.1	Wheat	nucleus	75.07	86.05
TraesCS4A01G148400.2	Wheat	nucleus	75.07	86.05
PGSC0003DMT400054414	Potato	cytosol	75.65	85.57
TraesCS2D01G131700.1	Wheat	cytosol	74.49	85.38
KRH13409	Soybean	cytosol	74.78	84.87
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	57.39	81.82
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	60.29	81.25
TraesCS2A01G129000.1	Wheat	plasma membrane	74.49	80.56
Solyc02g069880.2.1	Tomato	cytosol	44.64	76.24
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	14.49	75.76
KRH20763	Soybean	nucleus	74.49	73.64
GSMUA_Achr11P...	Banana	nucleus	63.48	73.49
TraesCS2B01G151100.1	Wheat	plasma membrane	74.49	73.43
GSMUA_Achr6P22600_001	Banana	cytosol	64.64	71.25
GSMUA_Achr2P09260_001	Banana	nucleus	64.35	70.93
GSMUA_Achr1P13770_001	Banana	cytosol	63.48	70.19
GSMUA_Achr3P16360_001	Banana	cytosol	63.48	69.75
GSMUA_Achr9P05880_001	Banana	nucleus	62.03	68.81
GSMUA_Achr5P06970_001	Banana	cytosol	63.77	67.9
HORVU2Hr1G022590.1	Barley	nucleus	74.2	67.55
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	57.1	56.61
GSMUA_Achr3P15050_001	Banana	nucleus	48.7	52.66
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	12.75	50.57
TraesCS1A01G371400.1	Wheat	cytosol	26.67	46.0

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr3G08700_001	EnsemblPlants:GSMUA_Achr3P08700_001
EnsemblPlants:GSMUA_Achr3T08700_001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0SCY7
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00029538DA	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT5 [Source:GMGC_GENE;Acc:GSMUA_Achr3G08700_001]

Coordinates

chr3:+:6285991..6296396

Molecular Weight (calculated)

39491.4 Da

IEP (calculated)

7.628

GRAVY (calculated)

-0.230

Length

345 amino acids

Sequence
(BLAST)

001: MALDATYYDD MSLNPEVIDP SKNEDMVEVS EHVNDHVQHS PKPNISVASS VRELLECPVC LNAMYPPIHQ CSNGHTLCSG CKPRVHNRCP TCRHELGNIR
101: CLALEKVAAS LELPCKYQSF GCLGIYPYYC KLKHESQCIF RPYNCPYAGS ECTVVGDIPY LVTHLKDDHK VDMHNGSSFN HRYVKSNPHE VENATWMLTV
201: FSCFGQFFCL HFEAFQLGTA PVYIAFLRFM GDDNEAKNYS YSLEVGGYGR KIIWQGVPRS IRDSHRKVRD SYDGLIIQRN MALFFSGGDR KELKLRVTGR
301: IWKEQNISDI YLVSVNLHPF LSKQIYSIKH YFLSKIILCI SLFGF

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.