Factsheet for GSMUA_Achr7P14550_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	36.78	48.48
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	57.47	19.53
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	50.57	18.18
GSMUA_Achr9P05880_001	Banana	nucleus	56.32	15.76
GSMUA_Achr6P22600_001	Banana	cytosol	56.32	15.65
GSMUA_Achr3P16360_001	Banana	cytosol	56.32	15.61
GSMUA_Achr2P09260_001	Banana	nucleus	55.17	15.34
GSMUA_Achr5P06970_001	Banana	cytosol	56.32	15.12
GSMUA_Achr1P13770_001	Banana	cytosol	54.02	15.06
GSMUA_Achr11P...	Banana	nucleus	48.28	14.09
GSMUA_Achr3P08700_001	Banana	cytosol	50.57	12.75
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	48.28	12.07
GSMUA_Achr3P15050_001	Banana	nucleus	39.08	10.66

Protein Annotations

MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr7G14550_001	EnsemblPlants:GSMUA_Achr7P14550_001	EnsemblPlants:GSMUA_Achr7T14550_001	UniProt:M0THJ2
PFAM:PF03145	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	TMHMM:TMhelix	UniParc:UPI000296BA2B
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT4 [Source:GMGC_GENE;Acc:GSMUA_Achr7G14550_001]

Coordinates

chr7:-:11712019..11712456

Molecular Weight (calculated)

9815.9 Da

IEP (calculated)

8.102

GRAVY (calculated)

0.179

Length

87 amino acids

Sequence
(BLAST)

1: MHVGSAFNHR NVKSNPREVE NASWVLTVII CHSIYFLFGI IPFALLRSSL SLSLSLQVFH CRFMGDENEA MHCSYSLEVG SNGRKLT

Best Arabidopsis Sequence Match ( AT4G27880.1 )
(BLAST)

001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS

Arabidopsis Description

SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.