Factsheet for GSMUA_Achr5P06970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P07380_001
GSMUA_Achr3P12880_001
GSMUA_Achr3P28160_001
GSMUA_Achr5P05860_001
GSMUA_Achr6P32570_001
GSMUA_Achr8P01770_001
GSMUA_Achr9P04780_001
GSMUA_Achr9P15580_001
GSMUA_Achr9P15590_001
GSMUA_Achr9P22660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	GSMUA_Achr3P12880_001	AT1G19010.1	21798944
AT3G61790.1	GSMUA_Achr3P28160_001	AT1G19010.1	21798944
AT3G61790.1	GSMUA_Achr9P22660_001	AT1G19010.1	21798944
AT3G61790.1	GSMUA_Achr6P32570_001	AT2G38490.1	21798944
AT3G61790.1	GSMUA_Achr8P01770_001	AT2G38490.1	21798944
AT3G61790.1	GSMUA_Achr9P04780_001	AT2G38490.1	21798944
AT3G61790.1	GSMUA_Achr3P07380_001	AT5G38470.1	21798944
AT3G61790.1	GSMUA_Achr5P05860_001	AT5G38470.1	21798944
AT3G61790.1	GSMUA_Achr9P15580_001	AT5G38470.1	21798944
AT3G61790.1	GSMUA_Achr9P15590_001	AT5G38470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	73.77	93.36
PGSC0003DMT400023575	Potato	cytosol	81.48	84.08
Solyc03g083270.2.1	Tomato	cytosol	81.17	84.03
PGSC0003DMT400050427	Potato	cytosol	81.17	83.49
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	61.73	82.64
Solyc06g051980.2.1	Tomato	cytosol	80.25	82.54
Solyc10g009420.2.1	Tomato	nucleus	79.94	81.96
PGSC0003DMT400048586	Potato	mitochondrion	81.17	81.93
GSMUA_Achr6P22600_001	Banana	cytosol	79.01	81.79
GSMUA_Achr2P09260_001	Banana	nucleus	78.7	81.47
GSMUA_Achr9P05880_001	Banana	nucleus	77.78	81.03
GSMUA_Achr3P16360_001	Banana	cytosol	78.09	80.57
GSMUA_Achr1P13770_001	Banana	cytosol	77.16	80.13
Bra003473.1-P	Field mustard	nucleus	78.4	79.87
CDY25077	Canola	nucleus	79.32	79.57
CDX67865	Canola	nucleus	79.32	79.57
CDX92848	Canola	nucleus	74.69	79.34
KRG97189	Soybean	nucleus	76.54	78.98
AT3G61790.1	Thale cress	nucleus	78.7	78.22
CDY19018	Canola	nucleus	77.16	77.64
CDX89221	Canola	nucleus	76.85	77.33
Bra026301.1-P	Field mustard	nucleus	76.85	77.33
Solyc01g096020.2.1	Tomato	cytosol	79.01	76.88
CDY14268	Canola	nucleus	75.93	76.88
Bra014421.1-P	Field mustard	cytosol	75.93	76.88
Bra010392.1-P	Field mustard	nucleus	75.93	76.88
CDX97399	Canola	nucleus	75.93	76.64
CDX89132	Canola	cytosol	76.85	76.38
PGSC0003DMT400000649	Potato	cytosol	79.01	76.19
AT4G27880.1	Thale cress	nucleus	76.85	76.15
CDY43950	Canola	nucleus	76.23	76.0
Solyc05g050580.2.1	Tomato	nucleus	77.47	75.83
PGSC0003DMT400018049	Potato	nucleus	77.47	75.38
KRH68916	Soybean	nucleus	75.0	74.09
GSMUA_Achr11P...	Banana	nucleus	65.74	71.48
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	14.2	69.7
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	68.83	64.08
GSMUA_Achr3P08700_001	Banana	cytosol	67.9	63.77
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	15.12	56.32
GSMUA_Achr3P15050_001	Banana	nucleus	54.01	54.86

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr5G06970_001	EnsemblPlants:GSMUA_Achr5P06970_001
EnsemblPlants:GSMUA_Achr5T06970_001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0SWC6
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002962D5E	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06970_001]

Coordinates

chr5:-:5062612..5065290

Molecular Weight (calculated)

36616.5 Da

IEP (calculated)

6.870

GRAVY (calculated)

-0.377

Length

324 amino acids

Sequence
(BLAST)

001: MESDNIECIS VSDATVVDDE EVAHVPHPFL KPHGDGSGTV AGGGRSPVMS PATRVHELLE CPVCTNSMYP PIHQCHNGHT LCSACKSRVH NRCPTCRQEL
101: GDIRCLALEK VAESLELPCR YFSLGCPEIF PYYSKLQHEA WCNFRPYNCP YAGSECSVVG DIPFLVAHLR DDHKVDMHIG STFNHRYVKS NPREVENATW
201: MLTVFHCYGQ YFCLHFEAFQ LGVAPVYMTF LRFMGDETEA RHYSYSLEVG SSGRKLIWEG TPRSIRDSHR KVRDSHDGLI IQRNMALFFS GGDRKELKLR
301: VTGRIWKEQQ NTDPAACIPN PCSS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.