Factsheet for GSMUA_Achr3P15050_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	50.78	66.94
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	50.16	62.5
GSMUA_Achr11P...	Banana	nucleus	57.37	61.41
GSMUA_Achr3P16360_001	Banana	cytosol	56.74	57.64
GSMUA_Achr2P09260_001	Banana	nucleus	56.43	57.51
GSMUA_Achr9P05880_001	Banana	nucleus	55.49	56.91
GSMUA_Achr1P13770_001	Banana	cytosol	55.49	56.73
GSMUA_Achr6P22600_001	Banana	cytosol	55.17	56.23
GSMUA_Achr5P06970_001	Banana	cytosol	54.86	54.01
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	10.66	51.52
GSMUA_Achr3P08700_001	Banana	cytosol	52.66	48.7
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	49.84	45.69
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	10.66	39.08

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr3G15050_001	EnsemblPlants:GSMUA_Achr3P15050_001
EnsemblPlants:GSMUA_Achr3T15050_001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0SES1
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000296919C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT3 [Source:GMGC_GENE;Acc:GSMUA_Achr3G15050_001]

Coordinates

chr3:-:15552969..15554819

Molecular Weight (calculated)

36510.0 Da

IEP (calculated)

8.451

GRAVY (calculated)

-0.465

Length

319 amino acids

Sequence
(BLAST)

001: MTNFKLGKKQ IHASSSSGFQ SERMDESPSL PMDSKSLNPK KQVQPPSKEK LPHGKSSLIL PNSDIDELLE CPVCSNAMFP PIQQCPSGHT LCFSCKNKVN
101: NKCPICRKEI GNIRCLALEK LAVSLHLPCA YHHLGCEEMF PYYSKLQHET RCTYRPYTCP HPGSDCPFTS DSLALLSHLR ERHKVDLQAG CTFNHRYVKQ
201: DPCSVDSCSW TLTLFNCFGQ YFCLHFEAFL LGCEPVYMAF LRFMGEESEA RRYNYCLEVG GHGRKLRWQG VPRSIRTHHR MVRDSHDGLI VHRSLALYFS
301: GGDQKELKLR VSGRIWREM

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.