Factsheet for GSMUA_Achr1P10820_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	83.47	78.91
GSMUA_Achr11P...	Banana	nucleus	94.21	76.51
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	19.01	69.7
Os02t0128800-01	Rice	cytosol	85.12	66.88
OQU84285	Sorghum	cytosol	84.71	65.92
TraesCS6B01G114800.1	Wheat	nucleus	83.47	64.95
TraesCS6A01G086800.1	Wheat	nucleus	83.47	64.95
TraesCSU01G019700.1	Wheat	nucleus	83.47	64.95
HORVU6Hr1G016120.2	Barley	nucleus	83.06	64.63
GSMUA_Achr3P16360_001	Banana	cytosol	83.47	64.33
GSMUA_Achr6P22600_001	Banana	cytosol	83.06	64.22
Zm00001d015123_P001	Maize	cytosol	83.06	64.22
GSMUA_Achr2P09260_001	Banana	nucleus	82.23	63.58
GSMUA_Achr9P05880_001	Banana	nucleus	80.99	63.02
GSMUA_Achr1P13770_001	Banana	cytosol	80.58	62.5
GSMUA_Achr5P06970_001	Banana	cytosol	82.64	61.73
GSMUA_Achr3P08700_001	Banana	cytosol	81.82	57.39
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	73.55	51.15
GSMUA_Achr3P15050_001	Banana	nucleus	66.94	50.78
GSMUA_Achr7P14550_001	Banana	cytosol, plastid, vacuole	18.18	50.57

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr1G10820_001	EnsemblPlants:GSMUA_Achr1P10820_001
EnsemblPlants:GSMUA_Achr1T10820_001	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M0RYU1	PFAM:PF03145
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI0002949F3C	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

E3 ubiquitin-protein ligase SINAT2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G10820_001]

Coordinates

chr1:+:8297437..8300188

Molecular Weight (calculated)

28050.9 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.391

Length

242 amino acids

Sequence
(BLAST)

001: MYPPIHQCPN GHTLCSSCKL RVHNHCPTCR QELGNIRCLA LEKVAESLEL PCRYQNLGCL EIHPYYSKLK HEQLCRFRPY NCPYAGSECL VTGDVPMLVA
101: HLKTDHKVDM HDGCTFNHRY VKPNPNEVEN ATWMLTVFSC YGHYFCLHFE AFLLGMAPVY MAFLRFLGED SEARHFSYSL EVGGNGRKLT WQGVPRSIRD
201: SHRKVRDSYD GLIIHRNMAL FFSGGDRHEL KLRITGRIWK EQ

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.