Factsheet for Os02t0128800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G019700.1	Wheat	nucleus	92.53	91.64
TraesCS6B01G114800.1	Wheat	nucleus	92.53	91.64
TraesCS6A01G086800.1	Wheat	nucleus	92.53	91.64
HORVU6Hr1G016120.2	Barley	nucleus	91.56	90.68
OQU84285	Sorghum	cytosol	90.58	89.71
Zm00001d015123_P001	Maize	cytosol	89.29	87.86
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	66.88	85.12
GSMUA_Achr11P...	Banana	nucleus	75.32	77.85
Os03t0356414-01	Rice	cytosol	66.56	68.11
Os07t0659800-01	Rice	cytosol	66.23	67.55
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	68.18	60.17
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	66.23	58.79
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	67.86	57.89
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	21.43	21.85
Os06t0311300-01	Rice	plasma membrane	16.23	20.0
Os01t0125000-00	Rice	nucleus	19.16	17.4
Os01t0124900-00	Rice	cytosol	10.39	16.16
Os01t0125500-00	Rice	mitochondrion	13.64	14.95
Os05t0152900-00	Rice	nucleus	18.83	14.5
Os01t0123800-00	Rice	nucleus	16.56	13.21
Os05t0152600-00	Rice	mitochondrion	18.83	11.28
Os01t0761900-00	Rice	cytosol	5.19	9.82
Os05t0152700-00	Rice	cytosol, extracellular	1.3	4.04

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	EntrezGene:4328179	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:AK104468
EMBL:AK119901	ProteinID:BAD07978.1	ProteinID:BAF07687.1	ProteinID:BAS76792.1	ProteinID:EAZ21601.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
EnsemblPlantsGene:Os02g0128800	EnsemblPlants:Os02t0128800-01	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF42	UniProt:Q6Z6Z3	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like
UniParc:UPI0000236865	RefSeq:XP_015623254.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg

Description

RING finger protein OsRFPHC-9, RING-HC protein 9TRAF-type domain containing protein. (Os02t0128800-01);TRAF-type domain containing protein. (Os02t0128800-02);Similar to SINA2. (Os02t0128800-03)

Coordinates

chr2:-:1481272..1485111

Molecular Weight (calculated)

34695.8 Da

IEP (calculated)

7.080

GRAVY (calculated)

-0.244

Length

308 amino acids

Sequence
(BLAST)

001: MAPGSSIVTD IPESDCVSDG LSEALTGIRL DGDSTCKPWS TSLVTVELSS LTGLNDLLEC PVCTNSMRPP ILQCPNGHTI CSNCKHRVEN HCPTCRQELG
101: NIRCLALEKV AESLQLPCKY QSLGCAEIHP YQNKLKHEEL CRFRPYSCPY AGSECLIAGD VPMLVSHLIN DHKVDLHEGC TFNHRYVKSN PYEVENATWM
201: LTVFKCFGQH FCLHFEAFLL GMAPVYMAFL RFMGEDSEAR NFCYSLEVGG NGRKLTWQGI PRSIRDSHKK VRDSFDGLII HRNMALFFSG GNRQELKLRV
301: TGRIWKEQ

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.