Factsheet for Os01t0234900-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 2
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, nucleus, peroxisome
Any Predictor:	cytoskeleton, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02178	Sorghum	cytosol, nucleus, peroxisome	81.56	92.18
TraesCS3A01G158000.1	Wheat	cytosol, nucleus, plasma membrane	80.69	89.74
HORVU3Hr1G032110.2	Barley	cytoskeleton, nucleus, plasma membrane	84.44	89.6
TraesCS3B01G185000.1	Wheat	cytoskeleton, nucleus, plasma membrane	84.44	89.6
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	83.57	89.23
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	83.29	80.06
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	76.95	76.5
Os03t0356414-01	Rice	cytosol	62.25	71.76
Os07t0659800-01	Rice	cytosol	61.96	71.19
Os02t0128800-01	Rice	cytosol	58.79	66.23
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	17.58	20.2
Os06t0311300-01	Rice	plasma membrane	14.41	20.0
Os01t0125000-00	Rice	nucleus	17.87	18.29
Os01t0124900-00	Rice	cytosol	9.22	16.16
Os01t0125500-00	Rice	mitochondrion	12.1	14.95
Os05t0152900-00	Rice	nucleus	16.43	14.25
Os01t0123800-00	Rice	nucleus	13.54	12.18
Os05t0152600-00	Rice	mitochondrion	17.58	11.87
Os01t0761900-00	Rice	cytosol	5.19	11.04
Os05t0152700-00	Rice	cytosol, extracellular	0.86	3.03

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	EntrezGene:4327774	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:AK120816
ProteinID:BAD81386.1	ProteinID:BAF04432.1	ProteinID:BAS71211.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlantsGene:Os01g0234900
EnsemblPlants:Os01t0234900-01	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73
UniProt:Q5NAX7	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000049E76C
RefSeq:XP_015633666.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

RING finger protein OsRFPHC-14, RING-HC protein 14Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2. (Os01t0234900-01)

Coordinates

chr1:-:7450936..7453683

Molecular Weight (calculated)

37342.5 Da

IEP (calculated)

6.995

GRAVY (calculated)

-0.211

Length

347 amino acids

Sequence
(BLAST)

001: MDVDSVECLS LPDSSSSSGA GAGGGGGGGG GGGVGAMDAA DDVGLALHAH GALLAAAAAA RAAACSKGGG GGGAAAGSGV HELLECPVCT NSMYPPIHQC
101: QNGHTLCSTC KARVHNRCPT CRQELGDIRC LALEKVAESL ELPCKYCSLG CPEIFPYYSK IKHEAQCMFR PYNCPYAGSE CAVVGDIPYL VAHLRDDHKV
201: DMHSGCTFNH RYVKSNPREV ENATWMLTVF HCFGQYFCLH FEAFQLGMAP VYMAFLRFMG DENEARNYSY SLEVGANGRK MVWEGTPRSV RDSHRKVRDS
301: HDGLIIQRNM ALFFSGGDRK ELKLRITGRI WKEQQTPDGA CIPNLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.