Factsheet for Os01t0123800-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G231400.1	Wheat	nucleus	37.31	41.62
EES02574	Sorghum	nucleus	44.56	38.39
HORVU2Hr1G118560.2	Barley	nucleus	25.91	35.71
TraesCS2D01G564800.1	Wheat	nucleus, plastid	34.46	35.47
TraesCS2B01G594500.1	Wheat	nucleus, plastid	34.46	35.47
TraesCS2A01G589200.1	Wheat	nucleus, plastid	34.2	35.39
HORVU2Hr1G118840.1	Barley	plastid	33.42	34.77
TraesCS2A01G586400.1	Wheat	nucleus	32.38	34.25
TraesCS2D01G600200.1	Wheat	nucleus	31.61	33.42
Os06t0311300-01	Rice	plasma membrane	14.51	22.4
Os01t0124900-00	Rice	cytosol	10.1	19.7
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	15.29	19.54
Os01t0125500-00	Rice	mitochondrion	13.99	19.22
Os05t0152900-00	Rice	nucleus	19.17	18.5
Os01t0125000-00	Rice	nucleus	15.8	17.99
Os02t0128800-01	Rice	cytosol	13.21	16.56
Os07t0659800-01	Rice	cytosol	12.18	15.56
Os01t0761900-00	Rice	cytosol	6.48	15.34
Os03t0356414-01	Rice	cytosol	11.92	15.28
Os05t0152600-00	Rice	mitochondrion	18.91	14.2
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	13.21	14.13
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	12.18	13.54
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	12.18	13.47
Os05t0152700-00	Rice	cytosol, extracellular	1.04	4.04

Protein Annotations

EntrezGene:107275768	Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:BAB40051.1	ProteinID:BAB55522.1
ProteinID:BAS70153.1	ProteinID:EAZ10357.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	EnsemblPlantsGene:Os01g0123800	EnsemblPlants:Os01t0123800-00	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF44	UniProt:Q9ARS6	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI00000A61E8	RefSeq:XP_015636261.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

Seven-in-absentia protein, sina domain containing protein. (Os01t0123800-00)

Coordinates

chr1:+:1335864..1337407

Molecular Weight (calculated)

43266.8 Da

IEP (calculated)

8.713

GRAVY (calculated)

-0.785

Length

386 amino acids

Sequence
(BLAST)

001: MSSGRVGDRI AIPAAGTARR RRRDPTTGPE SPVYLEGSRW SLSPAYQPSR RRRHDEEGYS RRRGRSRSNS PRRRRRRRPR SCRSRSRTRS YECEDSRCCH
101: TRPSPRSDDR EDDDDEQDGS WYHPPADNEF TVRIDGIGAD DGIFRCDGCF AMLSSPIYEC ANGDVICERC SYDDGGARVC RKCGTMELAR SRAIGHLLRC
201: IRFACKNRRY GCPSFLPRQD MDEHELSCDH EPCFCPIRRC GFAGAADSLA RHLTARHGWG RLRVAYGEAA VVPVQSPTIL RADDGRIFHL SCTRERGGGG
301: GTAMSMVCIR PDHVAGAEEE FTYEVRTACQ RLQMQAAVEG TSLRYGMKDA VQARVTVPDD MLLRQGDAVQ VFVRKATSAA GAANNN

Best Arabidopsis Sequence Match ( AT1G66630.1 )
(BLAST)

001: MENITNNSER SLDRPKRQRP VSMENVGGTA SGSEVARSAT LLELDLLDCP ICYHKLGAPI YQCDNGHIAC SSCCKKVKYK CPYCSLRIGF FRSRILEKIV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.