Factsheet for Os02t0293400-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G082100.1	Barley	nucleus	77.94	94.77
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	87.39	89.44
TraesCS7B01G244800.1	Wheat	cytosol, nucleus, peroxisome	87.39	89.44
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	87.39	89.44
EES06707	Sorghum	nucleus	87.39	88.66
Zm00001d015952_P001	Maize	nucleus	86.25	88.27
Zm00001d053289_P001	Maize	cytosol	86.25	86.74
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	81.38	78.67
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	76.5	76.95
Os03t0356414-01	Rice	cytosol	63.9	74.09
Os07t0659800-01	Rice	cytosol	61.89	71.52
Os02t0128800-01	Rice	cytosol	60.17	68.18
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	18.05	20.86
Os06t0311300-01	Rice	plasma membrane	14.33	20.0
Os01t0125000-00	Rice	nucleus	17.48	17.99
Os01t0124900-00	Rice	cytosol	8.6	15.15
Os01t0125500-00	Rice	mitochondrion	11.75	14.59
Os05t0152900-00	Rice	nucleus	16.62	14.5
Os01t0123800-00	Rice	nucleus	13.47	12.18
Os05t0152600-00	Rice	mitochondrion	17.77	12.06
Os01t0761900-00	Rice	cytosol	4.3	9.2
Os05t0152700-00	Rice	cytosol, extracellular	1.15	4.04

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	EntrezGene:4329066	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:AK072985
ProteinID:BAD21478.1	ProteinID:BAF08513.1	ProteinID:BAS78203.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlantsGene:Os02g0293400
EnsemblPlants:Os02t0293400-01	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42
UniProt:Q6KAC3	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0000377BEA
RefSeq:XP_015626757.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

SKIP interacting protein 14, SKIPa-interacting protein 14, SKIPa-interacting protein 14Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2. (Os02t0293400-01)

Coordinates

chr2:-:11157096..11161168

Molecular Weight (calculated)

38298.6 Da

IEP (calculated)

6.723

GRAVY (calculated)

-0.238

Length

349 amino acids

Sequence
(BLAST)

001: MDMASIECVS YSDSMDDDDD DGVGVGGVSH LPRPILVKPS SAAAAVNVVV VSAGSGGGAG GGGGGVGVVA GAPAVPPATS VHELLECPVC TNSMYPPIHQ
101: CQNGHTLCST CKTRVHNRCP TCRQELGDIR CLALEKVAES LELPCKYYSL GCPEIFPYYS KLKHESQCNF RPYNCPYAGS ECSVVGDIPF LVAHLRDDHK
201: VDMHSGCTFN HRYVKSNPRE VENATWMLTV FHCFGQYFCL HFEAFQLGVA PVYMAFLRFM GDENDARNYS YSLEVGANGR KMIWEGTPRS IRDSHRKVRD
301: SHDGLIIQRN MALFFSGGER KELKLRVTGR IWKEQQNPDS GACIPNLFS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.