Factsheet for HORVU7Hr1G082100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	97.91	82.4
TraesCS7B01G244800.1	Wheat	cytosol, nucleus, peroxisome	97.91	82.4
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	97.91	82.4
Zm00001d015952_P001	Maize	nucleus	93.38	78.59
EES06707	Sorghum	nucleus	93.73	78.2
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	94.77	77.94
HORVU3Hr1G032110.2	Barley	cytoskeleton, nucleus, plasma membrane	87.8	77.06
Zm00001d053289_P001	Maize	cytosol	91.99	76.08
HORVU6Hr1G016120.2	Barley	nucleus	70.73	65.27
HORVU1Hr1G033130.2	Barley	plastid	88.5	63.03
HORVU2Hr1G022590.1	Barley	nucleus	72.82	55.15
HORVU3Hr1G005260.1	Barley	cytosol	12.54	39.56
HORVU4Hr1G056260.1	Barley	nucleus	20.56	21.45
HORVU3Hr1G004860.1	Barley	cytosol	18.12	20.63
HORVU3Hr1G005320.1	Barley	nucleus	18.82	20.38
HORVU7Hr1G021160.2	Barley	cytosol	20.21	20.35
HORVU3Hr1G004950.1	Barley	nucleus	21.25	20.33
HORVU3Hr1G018640.1	Barley	cytosol	14.29	19.71
HORVU0Hr1G006120.2	Barley	cytosol, nucleus, plastid	19.16	19.64
HORVU2Hr1G118560.2	Barley	nucleus	18.47	18.93
HORVU3Hr1G004890.1	Barley	nucleus	18.82	18.0
HORVU3Hr1G004880.2	Barley	nucleus	21.25	17.99
HORVU1Hr1G012490.3	Barley	nucleus	20.56	17.77
HORVU3Hr1G018420.2	Barley	plastid	19.51	17.67
HORVU4Hr1G087120.3	Barley	nucleus	19.16	15.36
HORVU3Hr1G005270.1	Barley	nucleus	17.42	14.66
HORVU2Hr1G118840.1	Barley	plastid	18.47	14.29
HORVU0Hr1G006130.1	Barley	nucleus	16.03	13.94

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A287X315	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU7Hr1G082100
EnsemblPlants:HORVU7Hr1G082100.1	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000B478C20	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287X315]

Coordinates

chrchr7H:-:490529891..490534017

Molecular Weight (calculated)

32076.4 Da

IEP (calculated)

7.742

GRAVY (calculated)

-0.362

Length

287 amino acids

Sequence
(BLAST)

001: XXXXXGGIAG SLIPPATSVH ELLECPVCTN SMYPPIHQCQ NGHTLCSTCK ARVHNRCPTC RQELGDIRCL ALEKVAESLE LPCKYYSLGC PEIFPYYSKL
101: KHESQCNFRP YSCPYAGSEC SVVGDIPFLV SHLRDDHKVD MHSGCTFNHR YVKSNPREVE NATWMLTVFH CFGQYFCLHF EAFQLGMAPV YMAFLRFMGD
201: ENDARNYSYS LEVGANGRKM IWEGTPRSIR DSHRKVRDSH DGLIIQRNMA LFFSGGERKE LKLRVTGRIW KEQQNPDSGA CIPNLFS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.