Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G052700.1 | Wheat | nucleus | 46.43 | 51.38 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 58.57 | 49.7 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 14.29 | 43.96 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 36.07 | 38.11 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 25.0 | 27.78 |
| CDY11709 | Canola | nucleus | 15.71 | 26.67 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 30.71 | 25.9 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 25.36 | 25.82 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 31.07 | 25.66 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 26.79 | 25.0 |
| EES00387 | Sorghum | nucleus | 28.21 | 24.76 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 26.43 | 24.67 |
| CDY36209 | Canola | plastid | 17.86 | 23.7 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 20.71 | 21.56 |
| CDY25763 | Canola | nucleus | 20.71 | 21.32 |
| CDY12498 | Canola | nucleus | 20.71 | 21.32 |
| Bra012354.1-P | Field mustard | cytosol | 20.71 | 21.32 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 22.14 | 20.88 |
| AT1G66620.1 | Thale cress | nucleus | 23.21 | 20.77 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.21 | 20.11 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.07 | 20.07 |
| Bra022858.1-P | Field mustard | nucleus | 21.43 | 19.74 |
| CDY01699 | Canola | nucleus, plastid | 19.64 | 19.5 |
| KRH58384 | Soybean | nucleus | 22.14 | 19.38 |
| AT5G37870.1 | Thale cress | nucleus | 19.29 | 19.22 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 19.64 | 19.16 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.0 | 19.0 |
| AT1G66630.1 | Thale cress | cytosol | 20.36 | 18.81 |
| KRH42263 | Soybean | nucleus | 21.43 | 18.75 |
| CDX99687 | Canola | nucleus | 18.93 | 18.73 |
| Bra025434.1-P | Field mustard | nucleus | 18.93 | 18.66 |
| CDY52473 | Canola | nucleus | 18.93 | 18.66 |
| Bra004402.1-P | Field mustard | nucleus | 21.07 | 18.61 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 18.57 | 18.57 |
| AT5G37890.1 | Thale cress | nucleus | 18.93 | 18.53 |
| AT5G37910.1 | Thale cress | nucleus | 18.21 | 18.48 |
| Bra000425.1-P | Field mustard | nucleus | 18.57 | 18.37 |
| Bra018266.1-P | Field mustard | plastid | 18.93 | 18.34 |
| CDY10787 | Canola | plastid | 18.93 | 18.34 |
| AT5G37900.1 | Thale cress | nucleus | 15.71 | 18.26 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 18.57 | 18.25 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 12.5 | 17.5 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 21.79 | 17.48 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 20.36 | 17.43 |
| CDY27008 | Canola | nucleus | 20.36 | 17.33 |
| CDY47873 | Canola | nucleus | 20.0 | 17.28 |
| Bra004174.1-P | Field mustard | nucleus | 21.79 | 17.28 |
| CDY01695 | Canola | nucleus | 18.93 | 17.15 |
| Bra028395.1-P | Field mustard | nucleus | 19.64 | 16.98 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.71 | 16.76 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 18.57 | 16.72 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 20.36 | 16.72 |
| AT1G66660.2 | Thale cress | nucleus | 20.36 | 16.38 |
| Bra004176.1-P | Field mustard | nucleus | 19.29 | 16.02 |
| CDX96138 | Canola | nucleus | 19.29 | 15.88 |
| HORVU2Hr1G118840.1 | Barley | plastid | 20.71 | 15.63 |
| AT1G66610.1 | Thale cress | nucleus | 20.36 | 15.57 |
| CDY70665 | Canola | nucleus | 17.86 | 15.43 |
| Solyc03g034460.2.1 | Tomato | nucleus | 19.64 | 15.28 |
| AT5G62800.1 | Thale cress | nucleus | 18.93 | 15.23 |
| AT1G66650.1 | Thale cress | nucleus | 17.86 | 15.2 |
| AT5G37930.1 | Thale cress | nucleus | 18.93 | 15.19 |
| CDY01757 | Canola | cytosol | 2.86 | 15.09 |
| HORVU2Hr1G022590.1 | Barley | nucleus | 20.36 | 15.04 |
| Bra019710.1-P | Field mustard | nucleus | 18.21 | 14.91 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 11.07 | 14.9 |
| PGSC0003DMT400043050 | Potato | nucleus | 20.0 | 14.7 |
| CDY36211 | Canola | nucleus | 18.93 | 14.68 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 18.57 | 14.53 |
| HORVU3Hr1G018420.2 | Barley | plastid | 16.07 | 14.2 |
| Solyc03g042550.1.1 | Tomato | nucleus | 18.21 | 14.17 |
| Solyc03g034450.2.1 | Tomato | nucleus | 18.57 | 13.27 |
| HORVU1Hr1G033130.2 | Barley | plastid | 18.93 | 13.15 |
| Solyc03g042520.1.1 | Tomato | nucleus | 13.93 | 12.58 |
| CDY01758 | Canola | cytosol | 12.14 | 7.78 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU0Hr1G006120 | EnsemblPlants:HORVU0Hr1G006120.2 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M0VVK9 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000294A788 | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:M0VVK9]
Coordinates
chrchrUn:+:33020854..33023001
Molecular Weight (calculated)
31037.1 Da
IEP (calculated)
4.656
GRAVY (calculated)
-0.181
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVKSNVMSK EGEAMLQQGV GVVRKQNVTM RMEVFHCAVC AKPLRPPIFQ CSSGTSICSP CYRKLPVGEH DASKRSYTME RVVESILVPC KLGCNMKMAY
101: YRQDAHEREC LMGPCVCPVS GCSFVAPAPA LLGHLTTLHQ LPTAPVKLFV TFLCPVKPVT QVLSSECGRL FLLHVEPVES FGHAVSLTCV RPQTPREVVV
201: SVQFSSSEGH FQASKLEFRP DAEPRQCLCV VPGGGADVLV SIKICLVYSD NDELHVKDDD DEEEEDDDDQ DYDYDDDEEE
101: YRQDAHEREC LMGPCVCPVS GCSFVAPAPA LLGHLTTLHQ LPTAPVKLFV TFLCPVKPVT QVLSSECGRL FLLHVEPVES FGHAVSLTCV RPQTPREVVV
201: SVQFSSSEGH FQASKLEFRP DAEPRQCLCV VPGGGADVLV SIKICLVYSD NDELHVKDDD DEEEEDDDDQ DYDYDDDEEE
001: MVLASISEAL ISQGDGGERV AKRQRSAIVL LDLDILDCPI CCEALTSPIF QCDNGHLACG SCCPKLSNKC PACTLPVGHS RSRAMESVLE SILIPCPNVR
101: FGCTKSFFYG KESAHEKECI FSQCSCPSSV CDYTGSYKDL YAHYKLTHST NIFWNIKRFR CANFFTTSML ISDKILIKRV HEKKLLLAVQ CFREPCGVYV
201: TVSFIAPSAP EVGEFSYQLS YNVDGHTVTY ESPEVKRVCK VSIETPQENF MLIPHSLLRG DLLEMQVFII ENVDQE
101: FGCTKSFFYG KESAHEKECI FSQCSCPSSV CDYTGSYKDL YAHYKLTHST NIFWNIKRFR CANFFTTSML ISDKILIKRV HEKKLLLAVQ CFREPCGVYV
201: TVSFIAPSAP EVGEFSYQLS YNVDGHTVTY ESPEVKRVCK VSIETPQENF MLIPHSLLRG DLLEMQVFII ENVDQE
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.