Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018266.1-P | Field mustard | plastid | 100.0 | 100.0 |
| CDY11709 | Canola | nucleus | 26.64 | 46.67 |
| CDY01699 | Canola | nucleus, plastid | 44.98 | 46.1 |
| CDY52473 | Canola | nucleus | 43.6 | 44.37 |
| CDX99687 | Canola | nucleus | 42.56 | 43.46 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 42.56 | 41.84 |
| CDY01757 | Canola | cytosol | 7.61 | 41.51 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 42.56 | 41.41 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 24.57 | 39.66 |
| CDY25763 | Canola | nucleus | 36.33 | 38.6 |
| CDY12498 | Canola | nucleus | 35.64 | 37.87 |
| CDY01695 | Canola | nucleus | 40.48 | 37.86 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 11.76 | 37.36 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 43.94 | 36.39 |
| CDY27008 | Canola | nucleus | 39.1 | 34.35 |
| CDY47873 | Canola | nucleus | 37.72 | 33.64 |
| CDY36209 | Canola | plastid | 24.22 | 33.18 |
| CDY70665 | Canola | nucleus | 34.26 | 30.56 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.18 | 30.32 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 22.15 | 29.91 |
| KRH42263 | Soybean | nucleus | 31.83 | 28.75 |
| KRH58384 | Soybean | nucleus | 31.14 | 28.12 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 19.03 | 27.5 |
| CDX96138 | Canola | nucleus | 31.83 | 27.06 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 24.91 | 26.28 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 22.84 | 26.19 |
| CDY36211 | Canola | nucleus | 32.53 | 26.04 |
| KXG32009 | Sorghum | nucleus | 26.64 | 26.01 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 24.57 | 25.91 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 24.57 | 25.82 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 24.91 | 25.62 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 24.22 | 25.55 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 24.91 | 25.53 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 23.88 | 25.18 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.92 | 25.0 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 24.22 | 24.82 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 22.84 | 24.81 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 22.84 | 24.81 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 23.88 | 24.47 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 23.18 | 24.45 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 22.49 | 24.25 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 23.53 | 24.11 |
| KXG32014 | Sorghum | nucleus | 18.34 | 24.09 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 22.84 | 24.0 |
| Solyc03g034460.2.1 | Tomato | nucleus | 29.76 | 23.89 |
| PGSC0003DMT400043050 | Potato | nucleus | 31.49 | 23.88 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 22.84 | 23.83 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 22.15 | 23.79 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 22.84 | 23.74 |
| Solyc03g042550.1.1 | Tomato | nucleus | 29.41 | 23.61 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 23.18 | 23.59 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 22.15 | 23.27 |
| Zm00001d041049_P001 | Maize | nucleus | 26.3 | 23.24 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 23.88 | 23.08 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 21.11 | 23.02 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 23.88 | 23.0 |
| KXG37941 | Sorghum | cytosol | 22.15 | 22.86 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 24.22 | 22.8 |
| OQU78944 | Sorghum | nucleus | 25.61 | 22.7 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 23.18 | 22.56 |
| CDX88968 | Canola | cytosol | 24.22 | 22.51 |
| CDY67927 | Canola | cytosol | 24.22 | 22.51 |
| CDX92848 | Canola | nucleus | 23.53 | 22.3 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 22.49 | 22.26 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 22.49 | 22.26 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 23.18 | 22.26 |
| Solyc03g042520.1.1 | Tomato | nucleus | 23.88 | 22.26 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 22.84 | 22.22 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 22.84 | 22.22 |
| Solyc03g034450.2.1 | Tomato | nucleus | 30.1 | 22.19 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 22.49 | 22.18 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 19.38 | 22.13 |
| CDX97399 | Canola | nucleus | 24.57 | 22.12 |
| CDY57244 | Canola | cytosol | 23.53 | 22.08 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 25.26 | 22.05 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 25.61 | 22.02 |
| OQU86453 | Sorghum | cytosol | 16.26 | 21.96 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 24.91 | 21.95 |
| CDX71977 | Canola | cytosol | 23.53 | 21.94 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 20.42 | 21.93 |
| CDY14268 | Canola | nucleus | 24.22 | 21.88 |
| CDY14808 | Canola | cytosol | 22.84 | 21.85 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 23.18 | 21.82 |
| CDX89221 | Canola | nucleus | 24.22 | 21.74 |
| CDY19018 | Canola | nucleus | 24.22 | 21.74 |
| TraesCSU01G045900.1 | Wheat | cytosol | 22.49 | 21.74 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 22.49 | 21.67 |
| CDY06889 | Canola | cytosol | 22.15 | 21.55 |
| CDY43950 | Canola | nucleus | 24.22 | 21.54 |
| CDY35390 | Canola | nucleus | 22.49 | 21.17 |
| CDX67865 | Canola | nucleus | 23.53 | 21.05 |
| CDY25077 | Canola | nucleus | 23.53 | 21.05 |
| CDY22549 | Canola | nucleus | 22.49 | 21.04 |
| CDY67278 | Canola | cytosol | 5.88 | 20.99 |
| CDX89132 | Canola | cytosol | 23.53 | 20.86 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 23.88 | 20.78 |
| CDY56244 | Canola | cytosol | 20.76 | 20.76 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 20.76 | 20.69 |
| EES00387 | Sorghum | nucleus | 22.49 | 20.38 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 24.57 | 20.17 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 13.84 | 20.0 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 21.8 | 20.0 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 23.18 | 19.76 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 22.84 | 19.7 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 18.69 | 19.29 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 23.88 | 19.27 |
| OQU77422 | Sorghum | cytosol | 19.03 | 19.23 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 18.69 | 19.22 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 19.38 | 19.18 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 22.49 | 19.12 |
| CDY06056 | Canola | cytosol | 17.3 | 19.08 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 21.45 | 18.96 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 18.34 | 18.93 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 22.15 | 18.82 |
| EES17731 | Sorghum | nucleus | 22.49 | 18.79 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 21.8 | 18.53 |
| HORVU2Hr1G118840.1 | Barley | plastid | 23.53 | 18.33 |
| CDX75727 | Canola | cytosol | 13.49 | 18.22 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 22.15 | 18.08 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 23.18 | 17.87 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 15.22 | 17.81 |
| CDX82523 | Canola | cytosol | 13.15 | 17.76 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 20.76 | 17.6 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 23.18 | 17.54 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 22.49 | 17.43 |
| KXG21322 | Sorghum | nucleus | 22.49 | 17.38 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 22.49 | 17.33 |
| OQU77425 | Sorghum | nucleus | 21.45 | 16.49 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 18.69 | 16.36 |
| TraesCSU01G021700.1 | Wheat | nucleus | 20.42 | 16.16 |
| TraesCS1A01G070000.1 | Wheat | plastid | 13.15 | 15.64 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 19.72 | 15.62 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 19.72 | 15.62 |
| TraesCSU01G231400.1 | Wheat | nucleus | 18.69 | 15.61 |
| CDY01758 | Canola | cytosol | 23.53 | 15.56 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 23.88 | 15.13 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 23.88 | 15.03 |
| CDY38819 | Canola | nucleus | 10.03 | 14.95 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 14.19 | 14.86 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 20.76 | 14.81 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 14.53 | 14.74 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 23.53 | 14.66 |
| EES17735 | Sorghum | mitochondrion | 22.49 | 14.48 |
| CDY64066 | Canola | cytosol | 4.84 | 12.96 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 9.69 | 12.67 |
| EES02574 | Sorghum | nucleus | 19.03 | 12.28 |
| CDY67899 | Canola | cytosol, plastid | 6.92 | 12.05 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.38 | 4.04 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078FCR4 | UniProt:A0A078FCR4 | EnsemblPlants:CDY10787 | ProteinID:CDY10787 | ProteinID:CDY10787.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00048625001 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniPathway:UPA00143 |
| UniParc:UPI00025479CD | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
BnaA05g11490DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078FCR4]
Coordinates
chrLK032006:+:735287..736360
Molecular Weight (calculated)
32263.8 Da
IEP (calculated)
7.867
GRAVY (calculated)
-0.110
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLVTSTRQ QSPSNGNQIS SSSRSLGGEN DDTNCSAKLL DLEALNCPIC CVPLTSNIFQ CDNGHIACPT CCNKLRNKCP SCALPIGLIR CRAMERVIKA
101: VIVPCPNSMS GCIKKFSYGN ELTHEKECSF SRCYCPARNC NYTGSYKDLY SHFKTHNSER GYSYKFLFGE FAEVYFVLTE YTSVVMRENE AGLLFVVQCF
201: SEPYGVYVTV SCIAPSADEI GEFSCFISTT AVNYSIPHNI MTFKSPKVMK IRKLSSETPE KDFFLVPSFF FPGRQALKLR ICISKLEQE
101: VIVPCPNSMS GCIKKFSYGN ELTHEKECSF SRCYCPARNC NYTGSYKDLY SHFKTHNSER GYSYKFLFGE FAEVYFVLTE YTSVVMRENE AGLLFVVQCF
201: SEPYGVYVTV SCIAPSADEI GEFSCFISTT AVNYSIPHNI MTFKSPKVMK IRKLSSETPE KDFFLVPSFF FPGRQALKLR ICISKLEQE
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.