Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47873 | Canola | nucleus | 94.83 | 96.3 |
| AT5G37930.1 | Thale cress | nucleus | 72.64 | 68.48 |
| CDY12498 | Canola | nucleus | 44.38 | 53.68 |
| CDY25763 | Canola | nucleus | 44.07 | 53.31 |
| CDY11709 | Canola | nucleus | 22.8 | 45.45 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 12.16 | 43.96 |
| CDY01699 | Canola | nucleus, plastid | 34.95 | 40.78 |
| CDY52473 | Canola | nucleus | 34.65 | 40.14 |
| CDX99687 | Canola | nucleus | 34.35 | 39.93 |
| CDY10787 | Canola | plastid | 34.35 | 39.1 |
| CDY36209 | Canola | plastid | 24.92 | 38.86 |
| CDY70665 | Canola | nucleus | 37.69 | 38.27 |
| KRH58384 | Soybean | nucleus | 35.26 | 36.25 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 38.3 | 36.1 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 31.91 | 35.35 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 19.15 | 35.2 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 31.31 | 35.03 |
| KRH42263 | Soybean | nucleus | 34.04 | 35.0 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 21.28 | 35.0 |
| CDY01695 | Canola | nucleus | 31.91 | 33.98 |
| CDX96138 | Canola | nucleus | 34.35 | 33.24 |
| CDY36211 | Canola | nucleus | 36.17 | 32.96 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 20.67 | 31.78 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.67 | 30.77 |
| PGSC0003DMT400043050 | Potato | nucleus | 34.35 | 29.66 |
| Solyc03g034460.2.1 | Tomato | nucleus | 32.22 | 29.44 |
| Solyc03g042550.1.1 | Tomato | nucleus | 31.31 | 28.61 |
| CDY01757 | Canola | cytosol | 4.56 | 28.3 |
| Solyc03g034450.2.1 | Tomato | nucleus | 33.13 | 27.81 |
| Solyc03g042520.1.1 | Tomato | nucleus | 25.53 | 27.1 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 21.58 | 26.69 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 22.8 | 26.6 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 22.8 | 26.6 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 22.49 | 26.33 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 21.88 | 26.28 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 21.58 | 25.91 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 21.58 | 25.91 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 21.58 | 25.82 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 20.67 | 25.56 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 21.28 | 25.55 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.29 | 25.54 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 21.28 | 25.45 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 19.45 | 25.4 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 21.58 | 25.18 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 21.58 | 25.18 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 20.97 | 25.09 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 25.23 | 25.08 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 20.36 | 25.0 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 24.92 | 25.0 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 20.97 | 24.91 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 20.67 | 24.82 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 21.88 | 24.66 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 20.06 | 24.54 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 20.67 | 24.46 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 20.97 | 24.3 |
| KXG37941 | Sorghum | cytosol | 20.67 | 24.29 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 24.62 | 24.11 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 22.49 | 24.1 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 22.49 | 24.1 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 21.28 | 23.89 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 21.58 | 23.67 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 20.97 | 23.63 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 21.58 | 23.59 |
| Zm00001d041049_P001 | Maize | nucleus | 23.4 | 23.55 |
| CDY67278 | Canola | cytosol | 5.78 | 23.46 |
| OQU78944 | Sorghum | nucleus | 23.1 | 23.31 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 20.97 | 23.23 |
| KXG32014 | Sorghum | nucleus | 15.5 | 23.18 |
| KXG32009 | Sorghum | nucleus | 20.67 | 22.97 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 24.92 | 22.91 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 20.67 | 22.9 |
| CDX97399 | Canola | nucleus | 22.19 | 22.74 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 20.67 | 22.67 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 20.36 | 22.56 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 20.36 | 22.41 |
| CDY57244 | Canola | cytosol | 20.97 | 22.4 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 18.24 | 22.3 |
| CDX92848 | Canola | nucleus | 20.67 | 22.3 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.72 | 22.27 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 17.93 | 22.26 |
| CDY14268 | Canola | nucleus | 21.58 | 22.19 |
| CDX88968 | Canola | cytosol | 20.97 | 22.19 |
| CDY67927 | Canola | cytosol | 20.97 | 22.19 |
| CDY56244 | Canola | cytosol | 19.45 | 22.15 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 17.02 | 22.13 |
| TraesCSU01G045900.1 | Wheat | cytosol | 20.06 | 22.07 |
| CDX71977 | Canola | cytosol | 20.67 | 21.94 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 18.54 | 21.79 |
| OQU77422 | Sorghum | cytosol | 18.84 | 21.68 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 21.88 | 21.49 |
| CDX89221 | Canola | nucleus | 20.97 | 21.43 |
| CDY19018 | Canola | nucleus | 20.97 | 21.43 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.36 | 21.27 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 21.88 | 21.24 |
| CDY43950 | Canola | nucleus | 20.97 | 21.23 |
| CDY06889 | Canola | cytosol | 19.15 | 21.21 |
| CDY35390 | Canola | nucleus | 19.76 | 21.17 |
| CDX89132 | Canola | cytosol | 20.97 | 21.17 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 21.28 | 21.08 |
| CDY22549 | Canola | nucleus | 19.76 | 21.04 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 18.54 | 20.89 |
| CDY14808 | Canola | cytosol | 19.15 | 20.86 |
| CDX67865 | Canola | nucleus | 20.36 | 20.74 |
| CDY25077 | Canola | nucleus | 20.36 | 20.74 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 22.19 | 20.74 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 18.24 | 20.69 |
| CDY06056 | Canola | cytosol | 16.41 | 20.61 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 20.36 | 20.49 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 17.33 | 20.36 |
| EES00387 | Sorghum | nucleus | 19.45 | 20.06 |
| EES17731 | Sorghum | nucleus | 20.97 | 19.94 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 11.85 | 19.5 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 20.06 | 19.41 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 16.41 | 19.22 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 19.76 | 19.12 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 19.76 | 19.12 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 20.97 | 18.4 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 20.97 | 18.4 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 19.76 | 18.36 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 20.36 | 18.36 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 20.36 | 18.36 |
| TraesCSU01G021700.1 | Wheat | nucleus | 20.36 | 18.36 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 20.67 | 18.23 |
| OQU86453 | Sorghum | cytosol | 11.85 | 18.22 |
| HORVU2Hr1G118840.1 | Barley | plastid | 20.36 | 18.06 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 18.54 | 17.89 |
| CDY01758 | Canola | cytosol | 23.71 | 17.85 |
| EES17735 | Sorghum | mitochondrion | 24.32 | 17.82 |
| TraesCS1A01G070000.1 | Wheat | plastid | 13.07 | 17.7 |
| KXG21322 | Sorghum | nucleus | 20.06 | 17.65 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 20.06 | 17.28 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 17.02 | 16.97 |
| OQU77425 | Sorghum | nucleus | 19.15 | 16.76 |
| CDX75727 | Canola | cytosol | 10.64 | 16.36 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 22.49 | 16.12 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 22.19 | 16.01 |
| TraesCSU01G231400.1 | Wheat | nucleus | 16.72 | 15.9 |
| CDX82523 | Canola | cytosol | 10.33 | 15.89 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 19.15 | 15.56 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 13.07 | 15.09 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 21.28 | 15.09 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 10.03 | 14.93 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 12.46 | 14.86 |
| EES02574 | Sorghum | nucleus | 17.63 | 12.95 |
| CDY38819 | Canola | nucleus | 6.99 | 11.86 |
| CDY64066 | Canola | cytosol | 3.65 | 11.11 |
| CDY67899 | Canola | cytosol, plastid | 5.17 | 10.24 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.61 | 2.02 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078GQU0 | UniProt:A0A078GQU0 | EnsemblPlants:CDY27008 | ProteinID:CDY27008 | ProteinID:CDY27008.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00036798001 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EF26A0 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
BnaC06g12240DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078GQU0]
Coordinates
chrLK032198:-:359529..360588
Molecular Weight (calculated)
36510.4 Da
IEP (calculated)
5.032
GRAVY (calculated)
-0.281
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MARFSVSGGD DGEGSSNHQS RKRQRLPSID EDEETAGSSG EEDEEDDRQI ESMSDDSDRE VVIEEARRIA EDPVTSQISS SKDSSLSVTL LDPDVLDCPI
101: CCEPLKAPIF QCDNGHLACS VCCAKVRNIC PSCTLPVGYI RCRAMEKVIE TSRVSCTNAK YGCKEKMLYG NRFSHEKLCV FPPCSCPVLN CNYTGYYKDL
201: NSHVRAKHKD EVIPFVWDVS VTIRLDKTTI LQEEKDGEVM VVQVFRGLHV VYVVVTCIAP SAREVGCFSY YLVTVPLAVD GSLVQRSMMK NIQKLSNEQP
301: EDGFMVIPSY MLSGSSRILL GRGRAYGHA
101: CCEPLKAPIF QCDNGHLACS VCCAKVRNIC PSCTLPVGYI RCRAMEKVIE TSRVSCTNAK YGCKEKMLYG NRFSHEKLCV FPPCSCPVLN CNYTGYYKDL
201: NSHVRAKHKD EVIPFVWDVS VTIRLDKTTI LQEEKDGEVM VVQVFRGLHV VYVVVTCIAP SAREVGCFSY YLVTVPLAVD GSLVQRSMMK NIQKLSNEQP
301: EDGFMVIPSY MLSGSSRILL GRGRAYGHA
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.