Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G030600.1 | Wheat | nucleus | 93.93 | 71.28 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 88.78 | 66.9 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 87.85 | 66.67 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 56.07 | 60.0 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 55.14 | 35.22 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 57.01 | 34.66 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 42.06 | 32.85 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 50.0 | 31.47 |
| CDY11709 | Canola | nucleus | 23.36 | 30.3 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 36.45 | 28.47 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 60.75 | 28.32 |
| CDY36209 | Canola | plastid | 26.17 | 26.54 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 35.98 | 25.75 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 33.18 | 24.91 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 29.91 | 23.79 |
| CDY12498 | Canola | nucleus | 29.91 | 23.53 |
| Bra012354.1-P | Field mustard | cytosol | 29.44 | 23.16 |
| CDY25763 | Canola | nucleus | 29.44 | 23.16 |
| AT1G66630.1 | Thale cress | cytosol | 31.78 | 22.44 |
| CDY01699 | Canola | nucleus, plastid | 29.44 | 22.34 |
| Bra000425.1-P | Field mustard | nucleus | 29.44 | 22.26 |
| Bra018266.1-P | Field mustard | plastid | 29.91 | 22.15 |
| CDY10787 | Canola | plastid | 29.91 | 22.15 |
| AT5G37870.1 | Thale cress | nucleus | 28.97 | 22.06 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 30.37 | 21.89 |
| Bra025434.1-P | Field mustard | nucleus | 28.97 | 21.83 |
| CDX99687 | Canola | nucleus | 28.5 | 21.55 |
| CDY52473 | Canola | nucleus | 28.5 | 21.48 |
| Bra022858.1-P | Field mustard | nucleus | 30.37 | 21.38 |
| CDY47873 | Canola | nucleus | 31.78 | 20.99 |
| AT5G37890.1 | Thale cress | nucleus | 28.04 | 20.98 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.5 | 20.81 |
| Bra028395.1-P | Field mustard | nucleus | 31.31 | 20.68 |
| CDY27008 | Canola | nucleus | 31.78 | 20.67 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 26.64 | 20.65 |
| AT1G66620.1 | Thale cress | nucleus | 29.91 | 20.45 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 28.04 | 20.41 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 31.78 | 20.24 |
| PGSC0003DMT400043047 | Potato | cytosol | 17.29 | 20.11 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 27.1 | 19.53 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 31.78 | 19.48 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 24.3 | 19.4 |
| KRH42263 | Soybean | nucleus | 28.97 | 19.38 |
| Bra004174.1-P | Field mustard | nucleus | 31.78 | 19.26 |
| AT5G37910.1 | Thale cress | nucleus | 24.77 | 19.2 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 34.11 | 19.11 |
| CDY01695 | Canola | nucleus | 27.57 | 19.09 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 15.89 | 18.99 |
| AT5G37930.1 | Thale cress | nucleus | 30.84 | 18.91 |
| AT1G66650.1 | Thale cress | nucleus | 28.97 | 18.84 |
| AT5G37900.1 | Thale cress | nucleus | 21.03 | 18.67 |
| Bra004402.1-P | Field mustard | nucleus | 27.57 | 18.61 |
| CDY70665 | Canola | nucleus | 28.04 | 18.52 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 17.29 | 18.5 |
| KRH58384 | Soybean | nucleus | 27.57 | 18.44 |
| AT5G62800.1 | Thale cress | nucleus | 29.44 | 18.1 |
| AT1G66610.1 | Thale cress | nucleus | 30.84 | 18.03 |
| Bra019710.1-P | Field mustard | nucleus | 28.5 | 17.84 |
| Solyc03g034460.2.1 | Tomato | nucleus | 29.44 | 17.5 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 26.17 | 17.34 |
| Solyc03g042550.1.1 | Tomato | nucleus | 28.97 | 17.22 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 23.83 | 16.94 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 23.83 | 16.94 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 15.89 | 16.92 |
| Bra004176.1-P | Field mustard | nucleus | 26.64 | 16.91 |
| PGSC0003DMT400043050 | Potato | nucleus | 29.91 | 16.8 |
| CDX96138 | Canola | nucleus | 26.64 | 16.76 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 19.63 | 16.67 |
| AT1G66660.2 | Thale cress | nucleus | 26.17 | 16.09 |
| CDY36211 | Canola | nucleus | 27.1 | 16.07 |
| Solyc03g034450.2.1 | Tomato | nucleus | 28.97 | 15.82 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 27.57 | 15.73 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 23.83 | 15.69 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 23.83 | 14.96 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 25.23 | 14.79 |
| Solyc03g042520.1.1 | Tomato | nucleus | 20.56 | 14.19 |
| CDY01758 | Canola | cytosol | 22.43 | 10.98 |
| CDY01757 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3D01G028800 | EnsemblPlants:TraesCS3D01G028800.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:-:10409530..10410877
Molecular Weight (calculated)
23742.5 Da
IEP (calculated)
7.658
GRAVY (calculated)
-0.246
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGTSSKRR VEAPGEGQSS CKRQNATMGM DTLDCPVCFH PLRPPIYQCS VGHFVCSSCR PKLVRNKCHL CSAETTFKRC LGMERLMESV TVACSNANYG
101: CAQKLTYYQR EEHEDACPSA PCFCPASSCS FAGPTDALLE HSASQHKWPC TTINYSEDVE LCLEPGLHFL RTKDREIFLL NVALEPYGHA ISVVCIQPKA
201: INSKFKCRMS LVPF
101: CAQKLTYYQR EEHEDACPSA PCFCPASSCS FAGPTDALLE HSASQHKWPC TTINYSEDVE LCLEPGLHFL RTKDREIFLL NVALEPYGHA ISVVCIQPKA
201: INSKFKCRMS LVPF
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.