Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99687 | Canola | nucleus | 39.37 | 48.41 |
| CDY52473 | Canola | nucleus | 39.37 | 48.24 |
| Bra025434.1-P | Field mustard | nucleus | 39.08 | 47.89 |
| AT5G37910.1 | Thale cress | nucleus | 36.78 | 46.38 |
| AT5G37870.1 | Thale cress | nucleus | 36.78 | 45.55 |
| AT5G37890.1 | Thale cress | nucleus | 35.63 | 43.36 |
| AT5G37900.1 | Thale cress | nucleus | 28.45 | 41.08 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 10.63 | 40.66 |
| AT1G66620.1 | Thale cress | nucleus | 31.61 | 35.14 |
| AT1G66630.1 | Thale cress | cytosol | 27.01 | 31.02 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 18.1 | 29.44 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.68 | 29.41 |
| AT1G66610.1 | Thale cress | nucleus | 30.17 | 28.69 |
| AT5G37930.1 | Thale cress | nucleus | 28.74 | 28.65 |
| KRH42263 | Soybean | nucleus | 25.57 | 27.81 |
| AT1G66650.1 | Thale cress | nucleus | 26.15 | 27.66 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 21.55 | 27.27 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 20.69 | 27.07 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 21.26 | 27.01 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 19.54 | 26.98 |
| KRH58384 | Soybean | nucleus | 24.71 | 26.88 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 15.23 | 26.5 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 21.26 | 26.24 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.79 | 26.09 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 20.98 | 25.98 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 20.11 | 25.55 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 20.4 | 25.54 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 20.69 | 25.53 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 20.69 | 25.53 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 20.11 | 25.45 |
| KXG37941 | Sorghum | cytosol | 20.4 | 25.36 |
| AT1G66660.2 | Thale cress | nucleus | 25.29 | 25.29 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 19.25 | 25.28 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 20.4 | 25.18 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 20.69 | 24.83 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 19.54 | 24.82 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 20.69 | 24.66 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 20.11 | 24.65 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 18.97 | 24.54 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 19.25 | 24.45 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 20.4 | 24.23 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 19.25 | 24.19 |
| Solyc03g034460.2.1 | Tomato | nucleus | 25.0 | 24.17 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 18.97 | 24.09 |
| KXG32009 | Sorghum | nucleus | 20.4 | 23.99 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 18.39 | 23.88 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 18.1 | 23.68 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.43 | 23.61 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 18.39 | 23.27 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 20.4 | 23.13 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 19.25 | 22.95 |
| Solyc03g042520.1.1 | Tomato | nucleus | 20.4 | 22.9 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.69 | 22.86 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 19.54 | 22.74 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 19.54 | 22.67 |
| KXG32014 | Sorghum | nucleus | 14.08 | 22.27 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.82 | 22.06 |
| PGSC0003DMT400043050 | Potato | nucleus | 24.14 | 22.05 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 18.97 | 22.0 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 16.95 | 21.93 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 21.26 | 21.83 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 19.25 | 21.82 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 20.98 | 21.79 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 15.52 | 21.34 |
| Solyc03g034450.2.1 | Tomato | nucleus | 23.85 | 21.17 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 20.11 | 21.08 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 14.94 | 21.05 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.07 | 21.0 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 20.4 | 20.88 |
| OQU78944 | Sorghum | nucleus | 19.54 | 20.86 |
| AT3G58040.3 | Thale cress | cytosol | 18.39 | 20.78 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 20.98 | 20.74 |
| AT2G41980.1 | Thale cress | nucleus | 18.1 | 20.66 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 20.11 | 20.59 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 20.11 | 20.59 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 19.54 | 20.54 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 19.83 | 20.54 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 19.25 | 20.43 |
| OQU77422 | Sorghum | cytosol | 16.67 | 20.28 |
| AT3G61790.1 | Thale cress | nucleus | 18.97 | 20.25 |
| AT4G27880.1 | Thale cress | nucleus | 18.97 | 20.18 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 18.97 | 20.18 |
| Zm00001d041049_P001 | Maize | nucleus | 18.97 | 20.18 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 16.95 | 19.87 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 16.67 | 19.86 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 16.67 | 19.53 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 16.67 | 19.27 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 16.38 | 19.19 |
| TraesCSU01G045900.1 | Wheat | cytosol | 16.38 | 19.06 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 15.23 | 18.93 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 15.23 | 18.93 |
| AT5G53360.1 | Thale cress | plasma membrane | 12.64 | 18.88 |
| EES00387 | Sorghum | nucleus | 17.24 | 18.81 |
| OQU86453 | Sorghum | cytosol | 11.21 | 18.22 |
| EES17731 | Sorghum | nucleus | 18.1 | 18.21 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 18.68 | 18.16 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 18.1 | 17.8 |
| KXG21322 | Sorghum | nucleus | 18.97 | 17.65 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 22.41 | 17.11 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 22.13 | 16.78 |
| OQU77425 | Sorghum | nucleus | 18.1 | 16.76 |
| TraesCSU01G231400.1 | Wheat | nucleus | 16.38 | 16.47 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 13.22 | 16.14 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 17.24 | 16.0 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 17.24 | 16.0 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 16.95 | 15.82 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 20.98 | 15.73 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 17.24 | 15.71 |
| TraesCSU01G021700.1 | Wheat | nucleus | 16.09 | 15.34 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 14.94 | 15.25 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 15.8 | 15.07 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 15.8 | 15.07 |
| HORVU2Hr1G118840.1 | Barley | plastid | 15.8 | 14.82 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 13.79 | 14.55 |
| TraesCS1A01G070000.1 | Wheat | plastid | 9.48 | 13.58 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 15.8 | 13.58 |
| EES02574 | Sorghum | nucleus | 17.24 | 13.39 |
| EES17735 | Sorghum | mitochondrion | 16.67 | 12.92 |
| AT3G13672.2 | Thale cress | nucleus | 8.62 | 12.35 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.86 | 3.03 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:836401 | ArrayExpress:AT5G62800 | EnsemblPlantsGene:AT5G62800 |
| RefSeq:AT5G62800 | TAIR:AT5G62800 | RefSeq:AT5G62800-TAIR-G | EnsemblPlants:AT5G62800.1 | TAIR:AT5G62800.1 | Unigene:At.29032 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PO:PO:0009047 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0000162923 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
Coordinates
chr5:+:25218634..25219967
Molecular Weight (calculated)
39577.6 Da
IEP (calculated)
7.983
GRAVY (calculated)
-0.328
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.