Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27008 | Canola | nucleus | 68.48 | 72.64 |
| CDY47873 | Canola | nucleus | 66.19 | 71.3 |
| Bra028395.1-P | Field mustard | nucleus | 65.9 | 70.99 |
| AT1G66650.1 | Thale cress | nucleus | 41.83 | 44.38 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 10.89 | 41.76 |
| AT5G37890.1 | Thale cress | nucleus | 32.66 | 39.86 |
| AT1G66630.1 | Thale cress | cytosol | 34.1 | 39.27 |
| AT5G37910.1 | Thale cress | nucleus | 30.95 | 39.13 |
| AT1G66660.2 | Thale cress | nucleus | 38.97 | 39.08 |
| AT5G37870.1 | Thale cress | nucleus | 31.23 | 38.79 |
| AT1G66620.1 | Thale cress | nucleus | 33.52 | 37.38 |
| KRH58384 | Soybean | nucleus | 33.81 | 36.88 |
| KRH42263 | Soybean | nucleus | 32.95 | 35.94 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 20.06 | 35.0 |
| AT5G37900.1 | Thale cress | nucleus | 24.07 | 34.85 |
| AT1G66610.1 | Thale cress | nucleus | 33.52 | 31.97 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 18.91 | 30.84 |
| PGSC0003DMT400043050 | Potato | nucleus | 32.38 | 29.66 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.62 | 29.41 |
| Solyc03g034460.2.1 | Tomato | nucleus | 30.09 | 29.17 |
| AT5G62800.1 | Thale cress | nucleus | 28.65 | 28.74 |
| Solyc03g034450.2.1 | Tomato | nucleus | 31.23 | 27.81 |
| Solyc03g042550.1.1 | Tomato | nucleus | 28.65 | 27.78 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 21.49 | 27.37 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 21.2 | 26.33 |
| Solyc03g042520.1.1 | Tomato | nucleus | 23.21 | 26.13 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 24.64 | 25.98 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 20.92 | 25.89 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 20.34 | 25.82 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 19.77 | 25.65 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 24.07 | 25.61 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 24.64 | 25.6 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 19.48 | 25.56 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 20.34 | 25.54 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 20.63 | 25.53 |
| Zm00001d041049_P001 | Maize | nucleus | 23.78 | 25.38 |
| OQU78944 | Sorghum | nucleus | 23.5 | 25.15 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 19.77 | 25.09 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 19.77 | 25.09 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 18.05 | 25.0 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 20.06 | 24.82 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 18.91 | 24.63 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 20.92 | 24.58 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 19.77 | 24.47 |
| PGSC0003DMT400043047 | Potato | cytosol | 12.89 | 24.46 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 19.2 | 24.45 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 20.92 | 24.25 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 19.2 | 24.19 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 18.62 | 24.16 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 18.91 | 24.09 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 18.91 | 24.09 |
| KXG37941 | Sorghum | cytosol | 19.2 | 23.93 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 20.92 | 23.78 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 18.05 | 23.68 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 20.34 | 23.67 |
| KXG32009 | Sorghum | nucleus | 20.06 | 23.65 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 19.77 | 23.63 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 19.77 | 23.63 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 20.06 | 23.57 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 20.06 | 23.57 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 24.07 | 23.46 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 20.06 | 23.33 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 18.91 | 23.24 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 19.48 | 23.21 |
| TraesCSU01G045900.1 | Wheat | cytosol | 19.77 | 23.08 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 17.48 | 23.02 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 18.05 | 22.99 |
| KXG32014 | Sorghum | nucleus | 14.33 | 22.73 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.34 | 22.54 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 19.77 | 22.48 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 19.2 | 22.41 |
| AT2G41980.1 | Thale cress | nucleus | 19.48 | 22.3 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 16.05 | 22.13 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 15.47 | 21.86 |
| OQU77422 | Sorghum | cytosol | 17.77 | 21.68 |
| AT3G58040.3 | Thale cress | cytosol | 18.91 | 21.43 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 17.19 | 21.43 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 20.34 | 21.39 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 20.34 | 20.94 |
| AT3G61790.1 | Thale cress | nucleus | 19.48 | 20.86 |
| AT4G27880.1 | Thale cress | nucleus | 19.48 | 20.8 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 19.48 | 20.8 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 20.92 | 20.74 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 17.19 | 20.69 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 19.77 | 20.6 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 20.06 | 20.59 |
| EES17731 | Sorghum | nucleus | 20.34 | 20.52 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 19.77 | 20.29 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 19.77 | 20.29 |
| EES00387 | Sorghum | nucleus | 18.34 | 20.06 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 20.06 | 19.77 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 16.33 | 19.52 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 15.47 | 19.22 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 18.62 | 19.06 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 15.19 | 18.93 |
| OQU86453 | Sorghum | cytosol | 11.46 | 18.69 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 10.6 | 18.5 |
| AT5G53360.1 | Thale cress | plasma membrane | 12.32 | 18.45 |
| TraesCSU01G021700.1 | Wheat | nucleus | 19.2 | 18.36 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 18.91 | 18.08 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 18.91 | 18.08 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 19.2 | 17.87 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 19.2 | 17.87 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 18.91 | 17.69 |
| HORVU2Hr1G118840.1 | Barley | plastid | 18.62 | 17.52 |
| KXG21322 | Sorghum | nucleus | 18.62 | 17.38 |
| OQU77425 | Sorghum | nucleus | 18.62 | 17.29 |
| EES17735 | Sorghum | mitochondrion | 21.78 | 16.93 |
| TraesCS1A01G070000.1 | Wheat | plastid | 11.75 | 16.87 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 17.77 | 16.23 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 15.19 | 16.06 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 20.92 | 15.9 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 20.63 | 15.79 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 17.77 | 15.31 |
| TraesCSU01G231400.1 | Wheat | nucleus | 14.9 | 15.03 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 19.77 | 14.87 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 11.46 | 14.04 |
| EES02574 | Sorghum | nucleus | 16.91 | 13.17 |
| AT3G13672.2 | Thale cress | nucleus | 8.31 | 11.93 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.57 | 2.02 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:833772 | ProteinID:AED94248.1 | ArrayExpress:AT5G37930 |
| EnsemblPlantsGene:AT5G37930 | RefSeq:AT5G37930 | TAIR:AT5G37930 | RefSeq:AT5G37930-TAIR-G | EnsemblPlants:AT5G37930.1 | TAIR:AT5G37930.1 |
| ProteinID:BAB09039.1 | EMBL:BT004120 | EMBL:BT004967 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | RefSeq:NP_198609.1 | PFAM:PF03145 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 |
| UniProt:Q84K34 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000000C290 | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
Coordinates
chr5:-:15102065..15103730
Molecular Weight (calculated)
38925.8 Da
IEP (calculated)
5.417
GRAVY (calculated)
-0.437
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.