Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004176.1-P | Field mustard | nucleus | 46.55 | 48.07 |
| CDX96138 | Canola | nucleus | 46.26 | 47.35 |
| AT1G66650.1 | Thale cress | nucleus | 43.1 | 45.59 |
| CDY36211 | Canola | nucleus | 46.55 | 44.88 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 11.49 | 43.96 |
| AT5G37930.1 | Thale cress | nucleus | 39.08 | 38.97 |
| AT5G37870.1 | Thale cress | nucleus | 28.74 | 35.59 |
| AT5G37890.1 | Thale cress | nucleus | 29.02 | 35.31 |
| AT1G66620.1 | Thale cress | nucleus | 31.61 | 35.14 |
| AT1G66630.1 | Thale cress | cytosol | 29.31 | 33.66 |
| AT5G37910.1 | Thale cress | nucleus | 26.44 | 33.33 |
| KRH42263 | Soybean | nucleus | 27.87 | 30.31 |
| KRH58384 | Soybean | nucleus | 27.87 | 30.31 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.67 | 29.0 |
| AT1G66610.1 | Thale cress | nucleus | 29.6 | 28.14 |
| AT5G37900.1 | Thale cress | nucleus | 19.25 | 27.8 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 16.09 | 26.17 |
| AT5G62800.1 | Thale cress | nucleus | 25.29 | 25.29 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 18.1 | 25.0 |
| PGSC0003DMT400043050 | Potato | nucleus | 27.3 | 24.93 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 18.97 | 24.81 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 19.54 | 24.73 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.23 | 23.98 |
| KXG32014 | Sorghum | nucleus | 14.94 | 23.64 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 18.97 | 23.4 |
| Solyc03g034450.2.1 | Tomato | nucleus | 26.15 | 23.21 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 18.68 | 23.13 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 18.68 | 23.05 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 17.53 | 23.02 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 18.1 | 22.99 |
| KXG32009 | Sorghum | nucleus | 19.54 | 22.97 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 16.67 | 22.92 |
| Solyc03g034460.2.1 | Tomato | nucleus | 23.56 | 22.78 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 19.54 | 22.67 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 18.1 | 22.34 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 17.53 | 22.26 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 17.53 | 22.26 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 17.53 | 22.26 |
| Solyc03g042550.1.1 | Tomato | nucleus | 22.99 | 22.22 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 17.53 | 22.18 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 18.97 | 22.0 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 17.53 | 21.94 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 18.97 | 21.93 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 17.24 | 21.9 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 18.68 | 21.89 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 18.68 | 21.89 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 19.54 | 21.59 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 18.39 | 21.55 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 17.24 | 21.28 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 17.24 | 21.13 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 16.67 | 21.09 |
| KXG37941 | Sorghum | cytosol | 16.95 | 21.07 |
| TraesCSU01G045900.1 | Wheat | cytosol | 18.1 | 21.07 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 16.09 | 21.05 |
| Solyc03g042520.1.1 | Tomato | nucleus | 18.68 | 20.97 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 16.09 | 20.82 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 14.66 | 20.65 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 16.38 | 20.58 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 17.24 | 20.55 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 17.24 | 20.55 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 18.1 | 20.52 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 19.25 | 20.49 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 17.24 | 20.48 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 15.8 | 20.45 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 16.38 | 20.36 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 16.95 | 20.34 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 16.95 | 20.21 |
| OQU78944 | Sorghum | nucleus | 18.68 | 19.94 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 17.53 | 19.87 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 15.23 | 19.78 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 19.25 | 19.76 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 16.95 | 19.73 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 18.97 | 19.64 |
| OQU77422 | Sorghum | cytosol | 16.09 | 19.58 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 15.8 | 19.57 |
| Zm00001d041049_P001 | Maize | nucleus | 18.39 | 19.57 |
| PGSC0003DMT400043047 | Potato | cytosol | 10.34 | 19.57 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 18.68 | 19.4 |
| AT2G41980.1 | Thale cress | nucleus | 16.95 | 19.34 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 18.39 | 19.34 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 19.25 | 18.93 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 18.39 | 18.82 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 18.39 | 18.82 |
| AT3G61790.1 | Thale cress | nucleus | 17.53 | 18.71 |
| OQU86453 | Sorghum | cytosol | 11.49 | 18.69 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 17.82 | 18.67 |
| AT4G27880.1 | Thale cress | nucleus | 17.53 | 18.65 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 17.53 | 18.6 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 18.1 | 18.53 |
| AT3G58040.3 | Thale cress | cytosol | 16.38 | 18.51 |
| EES17731 | Sorghum | nucleus | 18.39 | 18.5 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 14.66 | 18.21 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 18.39 | 18.18 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 18.39 | 17.88 |
| EES00387 | Sorghum | nucleus | 16.38 | 17.87 |
| AT5G53360.1 | Thale cress | plasma membrane | 11.78 | 17.6 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 16.09 | 16.97 |
| KXG21322 | Sorghum | nucleus | 18.1 | 16.84 |
| OQU77425 | Sorghum | nucleus | 18.1 | 16.76 |
| EES17735 | Sorghum | mitochondrion | 20.69 | 16.04 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 15.52 | 15.84 |
| HORVU2Hr1G118840.1 | Barley | plastid | 16.67 | 15.63 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 18.1 | 15.56 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 16.67 | 15.55 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 16.67 | 15.47 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 16.67 | 15.47 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 8.62 | 15.0 |
| TraesCS1A01G070000.1 | Wheat | plastid | 10.34 | 14.81 |
| TraesCSU01G231400.1 | Wheat | nucleus | 14.66 | 14.74 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 16.09 | 14.66 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 18.68 | 14.25 |
| TraesCSU01G021700.1 | Wheat | nucleus | 14.94 | 14.25 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 18.68 | 14.16 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 14.66 | 13.97 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 14.37 | 13.7 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 17.82 | 13.36 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 10.63 | 12.98 |
| EES02574 | Sorghum | nucleus | 14.94 | 11.61 |
| AT3G13672.2 | Thale cress | nucleus | 6.9 | 9.88 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.57 | 2.02 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:842984 | ProteinID:AEE34542.1 | ArrayExpress:AT1G66660 |
| EnsemblPlantsGene:AT1G66660 | RefSeq:AT1G66660 | TAIR:AT1G66660 | RefSeq:AT1G66660-TAIR-G | EnsemblPlants:AT1G66660.2 | TAIR:AT1G66660.2 |
| Unigene:At.35743 | ncoils:Coil | UniProt:F4IEX9 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | RefSeq:NP_001077779.1 | PFAM:PF03145 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0001505668 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
Coordinates
chr1:-:24861876..24863426
Molecular Weight (calculated)
39556.5 Da
IEP (calculated)
4.733
GRAVY (calculated)
-0.697
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.