Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G228300.1 | Wheat | cytosol | 60.5 | 53.97 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 46.26 | 44.83 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 32.38 | 33.09 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 31.32 | 32.71 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 32.74 | 32.62 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 29.18 | 32.41 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 32.74 | 29.97 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 28.47 | 29.85 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 28.47 | 29.09 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 28.11 | 28.83 |
| EES00387 | Sorghum | nucleus | 32.38 | 28.53 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 38.79 | 26.91 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 25.62 | 26.77 |
| CDY11709 | Canola | nucleus | 15.66 | 26.67 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 29.89 | 24.71 |
| TraesCS3A01G101600.1 | Wheat | nucleus | 15.3 | 24.29 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 24.91 | 23.57 |
| CDY36209 | Canola | plastid | 17.08 | 22.75 |
| AT5G37870.1 | Thale cress | nucleus | 22.42 | 22.42 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 21.0 | 21.53 |
| Bra000425.1-P | Field mustard | nucleus | 21.35 | 21.2 |
| CDY01699 | Canola | nucleus, plastid | 21.0 | 20.92 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 33.81 | 20.83 |
| TraesCS3A01G027500.1 | Wheat | plastid | 20.28 | 20.65 |
| Bra012354.1-P | Field mustard | cytosol | 19.93 | 20.59 |
| CDY12498 | Canola | nucleus | 19.93 | 20.59 |
| TraesCS3A01G101400.1 | Wheat | cytosol | 15.3 | 20.57 |
| CDY25763 | Canola | nucleus | 19.57 | 20.22 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 19.22 | 19.85 |
| Bra025434.1-P | Field mustard | nucleus | 19.93 | 19.72 |
| CDY52473 | Canola | nucleus | 19.93 | 19.72 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 18.86 | 19.7 |
| KRH42263 | Soybean | nucleus | 22.42 | 19.69 |
| KRH58384 | Soybean | nucleus | 22.06 | 19.38 |
| AT5G37910.1 | Thale cress | nucleus | 18.86 | 19.2 |
| CDX99687 | Canola | nucleus | 19.22 | 19.08 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 14.95 | 19.0 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.52 | 19.0 |
| AT5G37890.1 | Thale cress | nucleus | 19.22 | 18.88 |
| AT1G66620.1 | Thale cress | nucleus | 21.0 | 18.85 |
| CDY01695 | Canola | nucleus | 20.64 | 18.77 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 22.06 | 18.73 |
| Bra018266.1-P | Field mustard | plastid | 19.22 | 18.69 |
| CDY10787 | Canola | plastid | 19.22 | 18.69 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 18.51 | 18.64 |
| AT5G37900.1 | Thale cress | nucleus | 15.66 | 18.26 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 23.49 | 18.08 |
| CDY70665 | Canola | nucleus | 20.64 | 17.9 |
| AT1G66630.1 | Thale cress | cytosol | 19.22 | 17.82 |
| AT5G62800.1 | Thale cress | nucleus | 22.06 | 17.82 |
| Bra022858.1-P | Field mustard | nucleus | 19.22 | 17.76 |
| TraesCS1A01G070000.1 | Wheat | plastid | 15.3 | 17.7 |
| Bra019710.1-P | Field mustard | nucleus | 21.35 | 17.54 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 21.71 | 17.48 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 16.01 | 17.37 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 18.15 | 17.35 |
| Bra004174.1-P | Field mustard | nucleus | 21.71 | 17.28 |
| TraesCS4A01G369000.1 | Wheat | cytosol | 11.39 | 17.2 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.15 | 17.17 |
| AT1G66650.1 | Thale cress | nucleus | 19.93 | 17.02 |
| Bra028395.1-P | Field mustard | nucleus | 19.57 | 16.98 |
| CDY47873 | Canola | nucleus | 19.57 | 16.98 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.03 | 16.85 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 17.79 | 16.61 |
| CDY27008 | Canola | nucleus | 19.22 | 16.41 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 18.15 | 16.4 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 21.71 | 16.35 |
| Bra004402.1-P | Field mustard | nucleus | 18.15 | 16.09 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 17.79 | 16.03 |
| AT1G66610.1 | Thale cress | nucleus | 20.64 | 15.85 |
| AT1G66660.2 | Thale cress | nucleus | 19.57 | 15.8 |
| Bra004176.1-P | Field mustard | nucleus | 18.86 | 15.73 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 17.79 | 15.67 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 9.96 | 15.64 |
| CDX96138 | Canola | nucleus | 18.86 | 15.59 |
| AT5G37930.1 | Thale cress | nucleus | 19.22 | 15.47 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 18.51 | 15.25 |
| Solyc03g042550.1.1 | Tomato | nucleus | 19.22 | 15.0 |
| Solyc03g034460.2.1 | Tomato | nucleus | 19.22 | 15.0 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 10.68 | 15.0 |
| PGSC0003DMT400043050 | Potato | nucleus | 19.93 | 14.7 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 18.15 | 14.7 |
| Solyc03g034450.2.1 | Tomato | nucleus | 19.93 | 14.29 |
| CDY36211 | Canola | nucleus | 17.44 | 13.57 |
| Solyc03g042520.1.1 | Tomato | nucleus | 14.59 | 13.23 |
| CDY01757 | Canola | cytosol | 2.49 | 13.21 |
| CDY01758 | Canola | cytosol | 13.17 | 8.47 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like |
| SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3A01G031300 | EnsemblPlants:TraesCS3A01G031300.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:17084528..17085502
Molecular Weight (calculated)
30540.9 Da
IEP (calculated)
4.690
GRAVY (calculated)
-0.184
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTDVFDCPI CSTPLSPPIF QCSLGHFVCS ACHDKLPGTD RACSMCSRPV LDRCHGVECI VGSVLLPCSY ALHGCTAAIL YHQKGEHEKV CLHAPCFCPE
101: NGSGFASTTE ALLGRFTAKH DWPITAFKYY EPFDVPVKAD VHILHGSGEE VEKDNDSDLF LLHIGYPDAP LHSVSLVRVQ AHAQEYGVGC SVGFSWFMGQ
201: YQVATLDFIR TSSLSNGLPK CSFCIVPEVR RGGGGPVMLS VTIGINTEED EEDDNKEGDD DDSHVKVGEN KEEDEASHKA D
101: NGSGFASTTE ALLGRFTAKH DWPITAFKYY EPFDVPVKAD VHILHGSGEE VEKDNDSDLF LLHIGYPDAP LHSVSLVRVQ AHAQEYGVGC SVGFSWFMGQ
201: YQVATLDFIR TSSLSNGLPK CSFCIVPEVR RGGGGPVMLS VTIGINTEED EEDDNKEGDD DDSHVKVGEN KEEDEASHKA D
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.