Factsheet for TraesCS6A01G086800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G019700.1	Wheat	nucleus	99.68	99.68
TraesCS6B01G114800.1	Wheat	nucleus	99.68	99.68
HORVU6Hr1G016120.2	Barley	nucleus	98.71	98.71
Os02t0128800-01	Rice	cytosol	91.64	92.53
OQU84285	Sorghum	cytosol	89.71	89.71
Zm00001d015123_P001	Maize	cytosol	88.42	87.86
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	64.95	83.47
GSMUA_Achr11P...	Banana	nucleus	72.35	75.5
TraesCS4A01G148400.2	Wheat	nucleus	62.38	64.45
TraesCS3A01G158000.1	Wheat	cytosol, nucleus, plasma membrane	63.99	63.78
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	68.17	62.17
TraesCS2A01G129000.1	Wheat	plasma membrane	61.74	60.19
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	66.88	59.94
TraesCS1A01G371400.1	Wheat	cytosol	26.69	41.5
TraesCS3A01G101600.1	Wheat	nucleus	14.15	24.86
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	20.9	23.72
TraesCS3A01G031100.1	Wheat	cytosol	20.26	23.42
TraesCS3A01G062700.1	Wheat	nucleus	19.94	22.55
TraesCS3A01G027500.1	Wheat	plastid	19.94	22.46
TraesCS3A01G030600.1	Wheat	nucleus	20.26	22.34
TraesCS3A01G030800.1	Wheat	cytosol	19.29	21.82
TraesCS3A01G031200.1	Wheat	cytosol	18.33	21.27
TraesCS1A01G060800.1	Wheat	nucleus	20.9	21.17
TraesCS4A01G395500.1	Wheat	cytosol	18.97	21.15
TraesCS3A01G027900.1	Wheat	cytosol	18.33	20.96
TraesCS3A01G048300.1	Wheat	nucleus	18.01	20.44
TraesCS3A01G101400.1	Wheat	cytosol	13.5	20.1
TraesCS4A01G395600.1	Wheat	cytosol	16.72	20.08
TraesCS3A01G062800.1	Wheat	nucleus	18.65	20.0
TraesCS5A01G531400.2	Wheat	nucleus	21.22	19.94
TraesCS5A01G228300.1	Wheat	cytosol	19.29	19.05
TraesCS2A01G446400.1	Wheat	cytosol, nucleus, plastid	16.4	18.96
TraesCS3A01G030100.1	Wheat	nucleus	18.01	18.86
TraesCS3A01G032200.1	Wheat	nucleus	20.26	18.53
TraesCS3A01G031300.1	Wheat	cytosol	16.4	18.15
TraesCS2A01G586400.1	Wheat	nucleus	18.97	16.16
TraesCS4A01G369000.1	Wheat	cytosol	9.65	16.13
TraesCS2A01G589200.1	Wheat	nucleus, plastid	17.36	14.48
TraesCS3A01G032100.1	Wheat	nucleus	21.22	14.47
TraesCS1A01G070000.1	Wheat	plastid	9.32	11.93

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS6A01G086800	EnsemblPlants:TraesCS6A01G086800.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	TIGR:cd03829	TIGR:cd16571	:	:	:

Description

No Description!

Coordinates

chr6A:+:55547346..55550373

Molecular Weight (calculated)

34857.8 Da

IEP (calculated)

7.410

GRAVY (calculated)

-0.261

Length

311 amino acids

Sequence
(BLAST)

001: MAPGSSIVSV TEVPESDCGD RGLSEALSSI RLDGDSTSKP SWAASLVNVG LSSLTGLNDL LECPVCTNSM RPPILQCPNG HTICSSCKHR VDNHCPTCRQ
101: ELGNIRCLAL EKVAESIQLP CKYQSLGCTE IHPYQNKLKH EELCRFRPYS CPYAGSECLI AGDVPMLVSH LINDHKVDLH EGCTFNHRYV KSNPYEVENA
201: TWMLTVFKCF GQHFCLHFEA FLLGMSPVYM AFLRFMGEES EARSFCYSLE VGGNGRKLTW QGTPRSIRDG HKKVRDSFDG LIIHRNMALF FSSGTRQELK
301: LRVTGRIWKE Q

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.