Factsheet for TraesCS1A01G136400.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, nucleus, peroxisome
Any Predictor:	cytoskeleton, mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	72.05	99.21
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	88.47	88.99
EES19270	Sorghum	cytosol, nucleus, peroxisome	90.2	88.67
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	91.35	87.81
TraesCS3A01G158000.1	Wheat	cytosol, nucleus, plasma membrane	75.79	84.29
HORVU1Hr1G033130.2	Barley	plastid	96.54	83.13
TraesCS1B01G152800.1	Wheat	plastid	97.12	82.8
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	77.81	79.18
TraesCS4A01G148400.2	Wheat	nucleus	61.38	70.76
TraesCS6A01G086800.1	Wheat	nucleus	59.94	66.88
TraesCS2A01G129000.1	Wheat	plasma membrane	61.38	66.77
TraesCS1A01G371400.1	Wheat	cytosol	23.34	40.5
TraesCS3A01G101600.1	Wheat	nucleus	12.68	24.86
TraesCS3A01G030800.1	Wheat	cytosol	17.29	21.82
TraesCS3A01G030600.1	Wheat	nucleus	17.58	21.63
TraesCS4A01G395500.1	Wheat	cytosol	17.29	21.51
TraesCS3A01G027500.1	Wheat	plastid	17.0	21.38
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	16.71	21.17
TraesCS3A01G027900.1	Wheat	cytosol	16.43	20.96
TraesCS3A01G030100.1	Wheat	nucleus	17.87	20.88
TraesCS3A01G031100.1	Wheat	cytosol	16.14	20.82
TraesCS3A01G062700.1	Wheat	nucleus	16.43	20.73
TraesCS3A01G048300.1	Wheat	nucleus	16.14	20.44
TraesCS1A01G060800.1	Wheat	nucleus	17.87	20.2
TraesCS3A01G101400.1	Wheat	cytosol	12.1	20.1
TraesCS2A01G446400.1	Wheat	cytosol, nucleus, plastid	15.27	19.7
TraesCS4A01G395600.1	Wheat	cytosol	14.7	19.69
TraesCS3A01G062800.1	Wheat	nucleus	16.43	19.66
TraesCS3A01G031200.1	Wheat	cytosol	14.7	19.03
TraesCS5A01G228300.1	Wheat	cytosol	17.0	18.73
TraesCS3A01G032200.1	Wheat	nucleus	18.16	18.53
TraesCS3A01G031300.1	Wheat	cytosol	14.7	18.15
TraesCS5A01G531400.2	Wheat	nucleus	16.71	17.52
TraesCS2A01G586400.1	Wheat	nucleus	16.43	15.62
TraesCS4A01G369000.1	Wheat	cytosol	8.36	15.59
TraesCS2A01G589200.1	Wheat	nucleus, plastid	15.85	14.75
TraesCS3A01G032100.1	Wheat	nucleus	18.44	14.04
TraesCS1A01G070000.1	Wheat	plastid	8.93	12.76

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS1A01G136400	EnsemblPlants:TraesCS1A01G136400.2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	TIGR:cd03829	TIGR:cd16571	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:-:216415184..216456663

Molecular Weight (calculated)

38385.8 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.326

Length

347 amino acids

Sequence
(BLAST)

001: MDMDSVECLS LPDASMDVDD VDSHQHQHHH HSIPIHPVHL AANGGVGGRA FAKMNAGGAA GAGGVGATAG ATGGPPATSV HELLECPVCT NSMFPPIHQC
101: QNGHTLCSTC KARVHNRCPT CRQELGDIRC LALEKVAESL ELPCKYCSLG CPEIFPYYSK IKHEGQCSFR PYNCPYAGSE CAVAGDIPFL VAHLRDDHKV
201: DMHSGCTFNH RYVKSNPREV ENATWMLTVF HCFGQYFCLH FEAFQLGMAP VYMAFLRFMG DENEARNYTY SLEVGGNGRK MVWEGTPRSI RDSHRKVRDS
301: HDGLIIQRNM ALFFSGGDRK ELKLRVTGRI WKEQPNLEGT CIPNLCS

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.