CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	69.69	97.62
Zm00001d010403_P001	Maize	cytoskeleton, nucleus, peroxisome	95.47	96.56
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	92.92	90.86
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	88.67	90.2
EES02178	Sorghum	cytosol, nucleus, peroxisome	77.05	88.6
EES06707	Sorghum	nucleus	77.34	79.36
HORVU1Hr1G033130.2	Barley	plastid	88.1	77.17
TraesCS1B01G152800.1	Wheat	plastid	88.1	76.41
EER97677	Sorghum	cytosol	61.47	71.85
EER92255	Sorghum	nucleus	61.19	71.52
KXG19745	Sorghum	extracellular	18.41	67.71
OQU84285	Sorghum	cytosol	58.36	66.24
KXG22272	Sorghum	cytosol	15.86	54.9
KXG30435	Sorghum	cytosol	15.86	54.9
KXG32011	Sorghum	cytosol	17.28	25.1
KXG32010	Sorghum	extracellular	17.0	24.49
KXG32008	Sorghum	cytosol, nucleus, plastid	17.28	22.93
KXG32014	Sorghum	nucleus	14.16	22.73
KXG37942	Sorghum	cytosol, nucleus, plastid	16.15	21.43
KXG37941	Sorghum	cytosol	16.43	20.71
OQU86439	Sorghum	cytosol, mitochondrion, plastid	14.16	18.8
KXG32009	Sorghum	nucleus	15.58	18.58
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	16.71	18.1
OQU86460	Sorghum	nucleus	17.0	17.96
EES00387	Sorghum	nucleus	16.15	17.87
OQU77422	Sorghum	cytosol	14.45	17.83
KXG32019	Sorghum	nucleus, plastid	18.13	17.2
EES02573	Sorghum	cytosol	17.0	17.19
KXG32028	Sorghum	plastid	16.15	16.96
OQU78944	Sorghum	nucleus	15.58	16.87
KXG32085	Sorghum	nucleus	10.76	16.81
EES17728	Sorghum	cytosol, mitochondrion, nucleus	14.73	15.9
OQU77414	Sorghum	mitochondrion, nucleus	15.86	15.82
KXG21322	Sorghum	nucleus	16.15	15.24
EES17731	Sorghum	nucleus	14.73	15.03
OQU86453	Sorghum	cytosol	8.5	14.02
OQU77425	Sorghum	nucleus	14.16	13.3
EES17735	Sorghum	mitochondrion	15.86	12.47
EES02574	Sorghum	nucleus	13.88	10.94

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:8058290	UniProt:C5YV87
EnsemblPlants:EES19270	ProteinID:EES19270	ProteinID:EES19270.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3009G087800	SUPFAM:SSF49599
SUPFAM:SSF57850	unigene:Sbi.11076	InterPro:TRAF-like	UniParc:UPI0001A88839	RefSeq:XP_002440840.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:14990634..14997291

Molecular Weight (calculated)

38496.9 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.305

Length

353 amino acids

Sequence
(BLAST)

001: MDMDSVECLS LPDAAMDVDD VDGHPHHGHH GHLGLPLHPA HLPSSGAGRA FPKVNAGGGG AGPAGAGAAG AAGAAGAGGG PPATSVHELL ECPVCTNSMF
101: PPIHQCQNGH TLCSTCKARV HNRCPTCRQE LGDIRCLALE KVAESLELPC KYCSLGCPEI FPYYSKIKHE AQCSFRPYNC PYAGSECAVA GDIPFLVAHL
201: RDDHKVDMHS GCTFNHRYVK SNPREVENAT WMLTVFHCFG QYFCLHFEAF QLAMAPVYMA FLRFMGDENE ARNYTYSLEV GGNGRKMVWE GTPRSIRDSH
301: RKVRDSHDGL IIQRNMALFF SGGDRKELKL RVTGRIWKEQ TNPDGACIPN LCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.