Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 61.18 | 98.81 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 82.8 | 97.12 |
| Zm00001d037790_P001 | Maize | cytoskeleton, nucleus, peroxisome | 74.94 | 88.41 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 76.41 | 88.1 |
| Os05t0238200-01 | Rice | cytoskeleton, nucleus, peroxisome | 77.15 | 86.98 |
| HORVU1Hr1G033130.2 | Barley | plastid | 85.5 | 86.35 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 68.06 | 84.71 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 66.58 | 79.47 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 50.86 | 66.56 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 52.58 | 61.14 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 15.72 | 22.7 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 14.74 | 21.9 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 14.99 | 21.71 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 13.02 | 21.46 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 14.25 | 21.32 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 14.5 | 20.92 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 14.5 | 20.77 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 15.23 | 20.6 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 14.74 | 20.55 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 14.99 | 20.54 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 13.76 | 20.44 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 12.53 | 20.16 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 13.76 | 20.14 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 13.51 | 20.07 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 14.25 | 19.86 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 13.51 | 19.86 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 14.25 | 19.8 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 14.74 | 19.54 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 15.23 | 18.24 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 8.6 | 17.5 |
| TraesCS3B01G019600.1 | Wheat | plastid | 13.51 | 17.41 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 13.76 | 17.07 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 12.04 | 16.78 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 13.51 | 14.67 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 16.22 | 14.22 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 12.53 | 12.59 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF42 | InterPro:SINA-like | SUPFAM:SSF49599 |
| SUPFAM:SSF57850 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS1B01G152800 | EnsemblPlants:TraesCS1B01G152800.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | TIGR:cd03829 | TIGR:cd16571 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1B:-:246768363..246800383
Molecular Weight (calculated)
45167.1 Da
IEP (calculated)
8.171
GRAVY (calculated)
-0.422
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQAFFPHFL IILQNGPKVP KPNQSRLPKR NEPTAAARRL RPQFPAQPRE TRKPTPGHAP AMDMDSVECL SLPDASMDVD DVDSHQHHHH HSIPIHPVHL
101: AANGGVGGRA FAKMNAGSAA AAGGVGATAG AAGGPPATSV HELLECPVCT NSMFPPIHQC QNGHTLCSTC KARVHNRCPT CRQELGDIRC LALEKVAESL
201: ELPCKYFSLG CPEIFPYYSK IKHEGQCSFR PSNCPYAGSE CAVAGDIPFL VAHLRDDHKV DMHSGCTFNH RYVKSNPREV ENATWMLTVF HCFGQYFCLH
301: FEAFQLGMAP VYMAFLRFMG DENEARNYTY SLEVGGNGRK MVWEGTPRSI RDSHRKVRDS HDGLIIQRNM ALFFSGGDRK ELKLRVTGRI WKEQPNPEGT
401: CIPNLCS
101: AANGGVGGRA FAKMNAGSAA AAGGVGATAG AAGGPPATSV HELLECPVCT NSMFPPIHQC QNGHTLCSTC KARVHNRCPT CRQELGDIRC LALEKVAESL
201: ELPCKYFSLG CPEIFPYYSK IKHEGQCSFR PSNCPYAGSE CAVAGDIPFL VAHLRDDHKV DMHSGCTFNH RYVKSNPREV ENATWMLTVF HCFGQYFCLH
301: FEAFQLGMAP VYMAFLRFMG DENEARNYTY SLEVGGNGRK MVWEGTPRSI RDSHRKVRDS HDGLIIQRNM ALFFSGGDRK ELKLRVTGRI WKEQPNPEGT
401: CIPNLCS
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.