Factsheet for TraesCS3B01G019600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	73.73	85.04
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	72.78	83.33
TraesCS3B01G442300.1	Wheat	cytosol	48.1	55.47
TraesCS3B01G018000.2	Wheat	cytosol	47.15	54.78
KXG32028	Sorghum	plastid	32.28	30.36
OQU86460	Sorghum	nucleus	31.96	30.24
TraesCS3B01G560800.1	Wheat	nucleus	20.89	23.74
TraesCS3B01G053500.1	Wheat	cytosol	20.89	23.4
TraesCS4B01G363200.1	Wheat	nucleus	22.78	21.95
TraesCS3B01G031200.1	Wheat	nucleus	20.25	21.92
TraesCS3B01G053400.1	Wheat	cytosol, nucleus, plastid	20.25	21.84
TraesCS3B01G074800.1	Wheat	cytosol	18.99	21.66
TraesCS3B01G052800.1	Wheat	cytosol	19.3	21.63
TraesCS3B01G033800.1	Wheat	nucleus	18.67	21.53
TraesCS3B01G050100.1	Wheat	cytosol	18.67	21.53
TraesCS3B01G053000.1	Wheat	cytosol	18.99	21.35
TraesCS3B01G052700.1	Wheat	nucleus	17.09	21.34
TraesCS3B01G028900.1	Wheat	cytosol	20.25	21.26
TraesCS3B01G054400.1	Wheat	cytosol	19.62	20.88
TraesCS3B01G032100.1	Wheat	cytosol	18.67	20.77
TraesCS6B01G114800.1	Wheat	nucleus	18.67	18.97
TraesCS3B01G050700.1	Wheat	nucleus	17.72	18.24
TraesCS3B01G033700.1	Wheat	nucleus	16.77	18.15
TraesCS3B01G032300.1	Wheat	cytosol	11.39	18.0
TraesCS3B01G050900.1	Wheat	cytosol	16.46	17.81
TraesCS3B01G052400.1	Wheat	nucleus	18.04	16.76
TraesCS7B01G244800.1	Wheat	cytosol, nucleus, peroxisome	18.04	16.72
TraesCS2B01G151100.1	Wheat	plasma membrane	18.35	16.57
TraesCS3B01G185000.1	Wheat	cytoskeleton, nucleus, plasma membrane	17.09	16.51
TraesCS3B01G050200.1	Wheat	nucleus	12.03	15.38
TraesCS3B01G052300.1	Wheat	nucleus	21.2	14.44
TraesCS3B01G031100.1	Wheat	nucleus	17.72	13.83
TraesCS2B01G594500.1	Wheat	nucleus, plastid	16.14	13.6
TraesCS1B01G152800.1	Wheat	plastid	17.41	13.51

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF43	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G019600
EnsemblPlants:TraesCS3B01G019600.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:+:8490624..8495753

Molecular Weight (calculated)

34339.7 Da

IEP (calculated)

7.847

GRAVY (calculated)

0.028

Length

316 amino acids

Sequence
(BLAST)

001: MRSCTITLHF AGSNLQKAGA ERAAAAESCA RKKARVESEA RAAASKITVN LDHKLLECSA CCSPLAPPLF QCTNGHIACS ECRTNAEYSC SLCAEPANTR
101: CDIMERVLGG MTAPCSFREF CCSATIPFTK KLTHEESCLH APCHCPIPYC RLYANSGRSL CEHIETKHCL VPYGDATAGS LSPVTLSDNE PVRLVFLDAR
201: AMFLLVVERC VPSGRAVSVV QLVSEPVKEE EEKDFKYKIQ NHAIIFVKCM SLYVVGFPVG MKCPMGTGMG KFLSPRTGMG MGTAMKLVSR ARATASLFVS
301: DDVWSPRDSP VYLELA

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.