Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G032300.1 | Wheat | cytosol | 64.08 | 91.0 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 88.38 | 89.01 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 66.9 | 88.78 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 84.86 | 85.46 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 77.82 | 78.65 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 45.07 | 37.65 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 35.56 | 35.82 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 33.8 | 34.53 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 29.58 | 33.2 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 34.15 | 33.11 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 33.8 | 32.88 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 30.99 | 32.12 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 30.99 | 31.77 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 30.63 | 31.75 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 51.41 | 31.47 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 32.04 | 31.16 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 30.63 | 29.79 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 25.0 | 28.74 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 30.99 | 28.66 |
| CDY11709 | Canola | nucleus | 16.55 | 28.48 |
| CDY36209 | Canola | plastid | 19.37 | 26.07 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 23.94 | 25.28 |
| CDY01699 | Canola | nucleus, plastid | 24.3 | 24.47 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 34.86 | 24.44 |
| CDY12498 | Canola | nucleus | 23.24 | 24.26 |
| AT5G37870.1 | Thale cress | nucleus | 23.94 | 24.2 |
| AT1G66630.1 | Thale cress | cytosol | 25.7 | 24.09 |
| Bra000425.1-P | Field mustard | nucleus | 23.94 | 24.03 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.66 | 23.98 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 25.35 | 23.92 |
| Bra025434.1-P | Field mustard | nucleus | 23.59 | 23.59 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 24.65 | 23.57 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 14.79 | 23.46 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.14 | 23.37 |
| CDY52473 | Canola | nucleus | 23.24 | 23.24 |
| CDY10787 | Canola | plastid | 23.59 | 23.18 |
| Bra018266.1-P | Field mustard | plastid | 23.59 | 23.18 |
| Bra012354.1-P | Field mustard | cytosol | 22.18 | 23.16 |
| CDY25763 | Canola | nucleus | 22.18 | 23.16 |
| Bra022858.1-P | Field mustard | nucleus | 24.65 | 23.03 |
| CDX99687 | Canola | nucleus | 22.89 | 22.97 |
| AT5G37890.1 | Thale cress | nucleus | 22.89 | 22.73 |
| AT1G66620.1 | Thale cress | nucleus | 25.0 | 22.68 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 21.48 | 22.26 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 22.54 | 21.77 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 20.77 | 21.69 |
| AT5G37900.1 | Thale cress | nucleus | 18.31 | 21.58 |
| AT5G37910.1 | Thale cress | nucleus | 20.77 | 21.38 |
| CDY47873 | Canola | nucleus | 24.3 | 21.3 |
| KRH42263 | Soybean | nucleus | 23.94 | 21.25 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 22.18 | 21.21 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 26.06 | 21.2 |
| Bra028395.1-P | Field mustard | nucleus | 23.94 | 20.99 |
| CDY27008 | Canola | nucleus | 24.3 | 20.97 |
| Bra004174.1-P | Field mustard | nucleus | 26.06 | 20.96 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 23.94 | 20.73 |
| CDY01695 | Canola | nucleus | 22.54 | 20.71 |
| KRH58384 | Soybean | nucleus | 22.89 | 20.31 |
| AT5G62800.1 | Thale cress | nucleus | 24.65 | 20.11 |
| AT1G66610.1 | Thale cress | nucleus | 25.7 | 19.95 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 21.83 | 19.94 |
| Bra004402.1-P | Field mustard | nucleus | 22.18 | 19.87 |
| AT1G66650.1 | Thale cress | nucleus | 22.89 | 19.76 |
| Solyc03g034460.2.1 | Tomato | nucleus | 24.65 | 19.44 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.3 | 19.17 |
| AT5G37930.1 | Thale cress | nucleus | 23.24 | 18.91 |
| TraesCS3B01G019600.1 | Wheat | plastid | 20.77 | 18.67 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.03 | 18.5 |
| PGSC0003DMT400043050 | Potato | nucleus | 24.65 | 18.37 |
| CDY70665 | Canola | nucleus | 20.77 | 18.21 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 20.42 | 17.74 |
| Solyc03g034450.2.1 | Tomato | nucleus | 24.3 | 17.6 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 21.13 | 17.6 |
| Bra019710.1-P | Field mustard | nucleus | 21.13 | 17.54 |
| AT1G66660.2 | Thale cress | nucleus | 21.13 | 17.24 |
| Bra004176.1-P | Field mustard | nucleus | 20.42 | 17.21 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 21.13 | 17.14 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 22.54 | 17.07 |
| CDX96138 | Canola | nucleus | 20.42 | 17.06 |
| CDY36211 | Canola | nucleus | 20.77 | 16.34 |
| Solyc03g042520.1.1 | Tomato | nucleus | 17.61 | 16.13 |
| TraesCS1B01G152800.1 | Wheat | plastid | 20.77 | 14.5 |
| CDY01758 | Canola | cytosol | 16.2 | 10.53 |
| CDY01757 | Canola | cytosol | 1.76 | 9.43 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G032100 |
| EnsemblPlants:TraesCS3B01G032100.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : |
Description
No Description!
Coordinates
chr3B:+:14547111..14548665
Molecular Weight (calculated)
31585.1 Da
IEP (calculated)
8.097
GRAVY (calculated)
-0.276
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGGTSSKRR VEAPAEGQSS GIGKRQNISM GMDTLDCPVC FHTLGPPIYQ CSVGHFICSS CLPKLVRNKC HLCSAETTFK RGAGMERLME SVMVLCSNAN
101: YGCTQKLTYY QKEEHEKACP RAPCFCPASS CSFAGAIDAL LEHSASEHKW PCTTIKYSED VELCLEPGLH FLRTKDREIF LLNVALEPYG HAISVVCIQP
201: KAINSKFKCR MSYGSFLNDY YQRSVYEIRS SSLFDGLPKG YNLILPKDEI TDDGKGTLLT FSIDDPNPKV KVREPIRLKP VRGV
101: YGCTQKLTYY QKEEHEKACP RAPCFCPASS CSFAGAIDAL LEHSASEHKW PCTTIKYSED VELCLEPGLH FLRTKDREIF LLNVALEPYG HAISVVCIQP
201: KAINSKFKCR MSYGSFLNDY YQRSVYEIRS SSLFDGLPKG YNLILPKDEI TDDGKGTLLT FSIDDPNPKV KVREPIRLKP VRGV
001: MENITNNSER SLDRPKRQRP VSMENVGGTA SGSEVARSAT LLELDLLDCP ICYHKLGAPI YQCDNGHIAC SSCCKKVKYK CPYCSLRIGF FRSRILEKIV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.