Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36209 | Canola | plastid | 20.14 | 41.71 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 8.01 | 38.46 |
| CDY11709 | Canola | nucleus | 12.81 | 33.94 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.74 | 32.31 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 20.37 | 29.97 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.04 | 28.5 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 22.65 | 28.37 |
| CDY52473 | Canola | nucleus | 17.16 | 26.41 |
| CDX99687 | Canola | nucleus | 16.93 | 26.15 |
| CDY01699 | Canola | nucleus, plastid | 16.02 | 24.82 |
| CDY47873 | Canola | nucleus | 17.85 | 24.07 |
| CDY27008 | Canola | nucleus | 17.85 | 23.71 |
| CDY10787 | Canola | plastid | 15.56 | 23.53 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 10.98 | 22.43 |
| KRH42263 | Soybean | nucleus | 14.65 | 20.0 |
| KRH58384 | Soybean | nucleus | 14.65 | 20.0 |
| CDY25763 | Canola | nucleus | 12.36 | 19.85 |
| CDY12498 | Canola | nucleus | 12.13 | 19.49 |
| KXG32014 | Sorghum | nucleus | 9.61 | 19.09 |
| PGSC0003DMT400043050 | Potato | nucleus | 16.48 | 18.9 |
| CDY01695 | Canola | nucleus | 13.27 | 18.77 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 11.67 | 18.55 |
| CDY67278 | Canola | cytosol | 3.43 | 18.52 |
| Solyc03g034460.2.1 | Tomato | nucleus | 15.1 | 18.33 |
| Solyc03g042550.1.1 | Tomato | nucleus | 15.1 | 18.33 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 11.67 | 18.15 |
| CDY70665 | Canola | nucleus | 13.04 | 17.59 |
| Solyc03g042520.1.1 | Tomato | nucleus | 12.36 | 17.42 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 10.76 | 17.15 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 10.98 | 17.02 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 10.98 | 17.02 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 10.98 | 17.02 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 10.3 | 16.92 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 10.76 | 16.91 |
| Solyc03g034450.2.1 | Tomato | nucleus | 15.1 | 16.84 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 10.53 | 16.73 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 10.07 | 16.6 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 10.07 | 16.54 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 8.24 | 16.29 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 11.44 | 16.29 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 10.53 | 16.2 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 11.67 | 16.19 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 11.9 | 15.85 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 11.9 | 15.71 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 10.53 | 15.7 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 10.07 | 15.6 |
| Zm00001d041049_P001 | Maize | nucleus | 11.67 | 15.6 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 8.92 | 15.48 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 10.3 | 15.41 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 10.53 | 15.38 |
| CDX96138 | Canola | nucleus | 11.9 | 15.29 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 11.67 | 15.18 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 10.07 | 15.07 |
| KXG32009 | Sorghum | nucleus | 10.07 | 14.86 |
| OQU78944 | Sorghum | nucleus | 10.98 | 14.72 |
| KXG37941 | Sorghum | cytosol | 9.38 | 14.64 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 9.15 | 14.6 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 8.24 | 14.57 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 11.9 | 14.53 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 9.61 | 14.48 |
| CDY36211 | Canola | nucleus | 11.9 | 14.4 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 9.84 | 14.33 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 8.92 | 14.23 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 8.92 | 14.23 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 8.24 | 14.23 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 8.92 | 14.18 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 10.98 | 14.16 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 8.7 | 14.13 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 11.21 | 13.92 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 8.47 | 13.81 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 8.47 | 13.75 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 10.53 | 13.73 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 8.7 | 13.72 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 8.47 | 13.5 |
| CDY06056 | Canola | cytosol | 8.01 | 13.36 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 9.15 | 13.33 |
| CDY57244 | Canola | cytosol | 9.38 | 13.31 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 10.07 | 13.25 |
| CDX71977 | Canola | cytosol | 9.38 | 13.23 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 8.47 | 13.17 |
| CDX92848 | Canola | nucleus | 9.15 | 13.11 |
| CDY35390 | Canola | nucleus | 9.15 | 13.03 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 9.15 | 13.03 |
| OQU77422 | Sorghum | cytosol | 8.47 | 12.94 |
| CDY14808 | Canola | cytosol | 8.92 | 12.91 |
| CDX88968 | Canola | cytosol | 9.15 | 12.86 |
| CDY67927 | Canola | cytosol | 9.15 | 12.86 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 8.47 | 12.67 |
| CDY22549 | Canola | nucleus | 8.92 | 12.62 |
| EES00387 | Sorghum | nucleus | 9.15 | 12.54 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 9.38 | 12.54 |
| CDY06889 | Canola | cytosol | 8.47 | 12.46 |
| CDX89221 | Canola | nucleus | 9.15 | 12.42 |
| CDY19018 | Canola | nucleus | 9.15 | 12.42 |
| CDX67865 | Canola | nucleus | 9.15 | 12.38 |
| CDY25077 | Canola | nucleus | 9.15 | 12.38 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 9.61 | 12.35 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 9.61 | 12.35 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 9.84 | 12.15 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 7.78 | 12.14 |
| EES17731 | Sorghum | nucleus | 9.61 | 12.14 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 9.38 | 12.06 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 10.53 | 12.04 |
| CDY43950 | Canola | nucleus | 8.92 | 12.0 |
| CDX97399 | Canola | nucleus | 8.7 | 11.84 |
| EES17735 | Sorghum | mitochondrion | 12.13 | 11.8 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 8.01 | 11.78 |
| CDX89132 | Canola | cytosol | 8.7 | 11.66 |
| CDY14268 | Canola | nucleus | 8.47 | 11.56 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 7.78 | 11.45 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 7.78 | 11.45 |
| CDY56244 | Canola | cytosol | 7.55 | 11.42 |
| TraesCSU01G045900.1 | Wheat | cytosol | 7.78 | 11.37 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 7.78 | 11.3 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 4.58 | 11.17 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 8.24 | 10.91 |
| KXG21322 | Sorghum | nucleus | 9.15 | 10.7 |
| OQU77425 | Sorghum | nucleus | 8.7 | 10.11 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 9.15 | 9.88 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 8.24 | 9.65 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 10.07 | 9.65 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 6.18 | 9.64 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 8.24 | 9.6 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 10.07 | 9.48 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 9.84 | 9.37 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 8.01 | 9.33 |
| HORVU2Hr1G118840.1 | Barley | plastid | 7.78 | 9.16 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 7.09 | 9.09 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 7.55 | 9.04 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 7.55 | 9.04 |
| TraesCSU01G021700.1 | Wheat | nucleus | 7.55 | 9.04 |
| EES02574 | Sorghum | nucleus | 8.7 | 8.48 |
| OQU86453 | Sorghum | cytosol | 4.12 | 8.41 |
| PGSC0003DMT400043047 | Potato | cytosol | 3.43 | 8.15 |
| TraesCSU01G231400.1 | Wheat | nucleus | 6.41 | 8.09 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 3.66 | 8.0 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 3.89 | 7.69 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 4.58 | 7.25 |
| CDX75727 | Canola | cytosol | 3.43 | 7.01 |
| CDX82523 | Canola | cytosol | 3.43 | 7.01 |
| CDY38819 | Canola | nucleus | 2.97 | 6.7 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 3.66 | 5.61 |
| TraesCS1A01G070000.1 | Wheat | plastid | 2.97 | 5.35 |
| CDY01757 | Canola | cytosol | 0.23 | 1.89 |
| CDY67899 | Canola | cytosol, plastid | 0.46 | 1.2 |
| CDY64066 | Canola | cytosol | 0.0 | 0.0 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.0 | 0.0 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078EQE1 |
| EnsemblPlants:CDY01758 | ProteinID:CDY01758 | ProteinID:CDY01758.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00112882001 | InterPro:IPR001841 | InterPro:IPR013083 | PFscan:PS50089 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | UniPathway:UPA00143 | UniParc:UPI0004EE14B8 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaC06g27980D
Coordinates
chrLK031929:-:68993..77131
Molecular Weight (calculated)
47530.9 Da
IEP (calculated)
6.148
GRAVY (calculated)
-0.181
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRDTNAEHD LAEEGSSSHP KRQPLSSLVE DEAETVQEAE GGENGEEGTV SSDRSRIMER VVEAVTVPCP TVKHGCTNKF STSLMAKSWP MRRNVVLLYA
101: TVLHQTATTP ACMNIRDRIL FLQESIDGPL VAVHSSAMLR IRIEMVSPIV SPIAKFLAML RKASRSRTKG QRLSSLVEDE AESVEVEAEP VEEVLSGTLL
201: DLDLLDCPVC CHALTNPIFQ CDNGHIACSS CCTNLRNKCP SCTLPIGACR KRIMERVVEA VTVPCLNAKH GCTENPRRRR VEQPPEEAED GENVGEVTAT
301: VAGDEVRSGT LVDLDLLDCS VCCQPLSNPI FQCDNGHVAC SACCTNLRNK CPSCALPIGV YRNRMMERVV EAIIVPCPNA KHGCTDKFSY GKELAHATVL
401: HQAATTPDSA RISTVTTTLT TWTHAKVSPV ALTRTHG
101: TVLHQTATTP ACMNIRDRIL FLQESIDGPL VAVHSSAMLR IRIEMVSPIV SPIAKFLAML RKASRSRTKG QRLSSLVEDE AESVEVEAEP VEEVLSGTLL
201: DLDLLDCPVC CHALTNPIFQ CDNGHIACSS CCTNLRNKCP SCTLPIGACR KRIMERVVEA VTVPCLNAKH GCTENPRRRR VEQPPEEAED GENVGEVTAT
301: VAGDEVRSGT LVDLDLLDCS VCCQPLSNPI FQCDNGHVAC SACCTNLRNK CPSCALPIGV YRNRMMERVV EAIIVPCPNA KHGCTDKFSY GKELAHATVL
401: HQAATTPDSA RISTVTTTLT TWTHAKVSPV ALTRTHG
001: MVKGTNAEQA LAREEASSSR PKRQRVPSIV EEEGENGGGD VVVRSGTLFE LDLLDCPICC NALTIPIFQC DKGHIACSSC CTNVSNKCPY CSLAIGNYRS
101: RIMERVVEAF IVRCPIVAGE ASSSRQKRLR VPSIDEENGE NGGRDVVVPS GTLSQLDLLD CPVCSKALKI SIFQCDNGHV ACSSCCIELR YKCPSCSLPI
201: GNYRCIIMEK VVKAIIVPCQ TPKWLHRDIL LWQRVSP
101: RIMERVVEAF IVRCPIVAGE ASSSRQKRLR VPSIDEENGE NGGRDVVVPS GTLSQLDLLD CPVCSKALKI SIFQCDNGHV ACSSCCIELR YKCPSCSLPI
201: GNYRCIIMEK VVKAIIVPCQ TPKWLHRDIL LWQRVSP
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.