Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000249.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY64066 | Canola | cytosol | 34.2 | 97.22 |
| CDY22549 | Canola | nucleus | 95.44 | 94.82 |
| CDY06889 | Canola | cytosol | 85.02 | 87.88 |
| CDY14808 | Canola | cytosol | 85.34 | 86.75 |
| CDY57244 | Canola | cytosol | 84.69 | 84.42 |
| CDY56244 | Canola | cytosol | 79.15 | 84.08 |
| CDX71977 | Canola | cytosol | 84.36 | 83.55 |
| CDY06056 | Canola | cytosol | 71.01 | 83.21 |
| CDX88968 | Canola | cytosol | 83.71 | 82.64 |
| CDY67927 | Canola | cytosol | 83.71 | 82.64 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 79.8 | 77.78 |
| PGSC0003DMT400060943 | Potato | cytosol | 58.96 | 73.88 |
| PGSC0003DMT400060947 | Potato | cytosol | 58.96 | 73.88 |
| CDY67899 | Canola | cytosol, plastid | 39.74 | 73.49 |
| CDY67278 | Canola | cytosol | 18.57 | 70.37 |
| KRH67087 | Soybean | nucleus | 76.55 | 69.53 |
| KRG95412 | Soybean | nucleus | 76.55 | 68.71 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 61.56 | 68.48 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 49.19 | 68.33 |
| Solyc10g080570.1.1 | Tomato | cytosol | 64.82 | 65.68 |
| CDX92848 | Canola | nucleus | 63.84 | 64.26 |
| CDX67865 | Canola | nucleus | 67.1 | 63.78 |
| CDY25077 | Canola | nucleus | 67.1 | 63.78 |
| CDY14268 | Canola | nucleus | 65.47 | 62.81 |
| CDX89221 | Canola | nucleus | 65.47 | 62.42 |
| CDY19018 | Canola | nucleus | 65.47 | 62.42 |
| CDX89132 | Canola | cytosol | 66.12 | 62.27 |
| CDY43950 | Canola | nucleus | 65.8 | 62.15 |
| CDX97399 | Canola | nucleus | 64.82 | 61.99 |
| CDY38819 | Canola | nucleus | 39.09 | 61.86 |
| CDX75727 | Canola | cytosol | 38.44 | 55.14 |
| CDX82523 | Canola | cytosol | 38.11 | 54.67 |
| CDY11709 | Canola | nucleus | 14.98 | 27.88 |
| CDY10787 | Canola | plastid | 21.17 | 22.49 |
| CDY25763 | Canola | nucleus | 19.54 | 22.06 |
| CDX99687 | Canola | nucleus | 20.2 | 21.91 |
| CDY52473 | Canola | nucleus | 20.2 | 21.83 |
| CDY12498 | Canola | nucleus | 18.89 | 21.32 |
| CDY01699 | Canola | nucleus, plastid | 19.54 | 21.28 |
| CDY36209 | Canola | plastid | 14.33 | 20.85 |
| CDY27008 | Canola | nucleus | 21.17 | 19.76 |
| CDY47873 | Canola | nucleus | 20.85 | 19.75 |
| CDY01695 | Canola | nucleus | 19.22 | 19.09 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.59 | 18.37 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 17.59 | 18.18 |
| CDX96138 | Canola | nucleus | 19.87 | 17.94 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 20.2 | 17.77 |
| CDY36211 | Canola | nucleus | 20.52 | 17.45 |
| CDY70665 | Canola | nucleus | 17.26 | 16.36 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 8.79 | 15.08 |
| CDY01757 | Canola | cytosol | 2.28 | 13.21 |
| CDY01758 | Canola | cytosol | 13.03 | 9.15 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 |
| InterPro:7-in-absentia-prot_TRAF-dom | GO:A0A078HAA9 | UniProt:A0A078HAA9 | EnsemblPlants:CDY35390 | ProteinID:CDY35390 | ProteinID:CDY35390.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00058374001 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 | InterPro:SINA-like | SUPFAM:SSF49599 |
| SUPFAM:SSF57850 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI00025403B1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | : | : | : | : | : |
Description
BnaA03g19700DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078HAA9]
Coordinates
chrLK032351:+:112150..114333
Molecular Weight (calculated)
34760.5 Da
IEP (calculated)
7.898
GRAVY (calculated)
-0.454
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPGGTTYKE ALESNWIGLD YEVRMSKVEA TNKPAKSASG AIGKIRSSNG SGVHELLECP VCTNLMYPPI NQCPNGHTLC SSCKQQVQNT CPTCRYELGN
101: IRCLALEKVA ESLEVSCRYQ SLGCHDIFPY YSKVKHEQHC RFRSYDCPYA GSECSVTGDI PTLVEHLKVD HKVDMHSGCT FNHRYVKSNP QEVENATWML
201: TVFNCFGRQF CLHFEAFQLG TAPVYMAFLR FMGDENEAKK FSYSLEVGAH SRKLTWQGIP RSIRDGHKKV RDSQDGLIIP RNMALFFSGS DKEELKLRVT
301: GRIWREE
101: IRCLALEKVA ESLEVSCRYQ SLGCHDIFPY YSKVKHEQHC RFRSYDCPYA GSECSVTGDI PTLVEHLKVD HKVDMHSGCT FNHRYVKSNP QEVENATWML
201: TVFNCFGRQF CLHFEAFQLG TAPVYMAFLR FMGDENEAKK FSYSLEVGAH SRKLTWQGIP RSIRDGHKKV RDSQDGLIIP RNMALFFSGS DKEELKLRVT
301: GRIWREE
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.