Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06889 | Canola | cytosol | 92.05 | 93.6 |
| CDY64066 | Canola | cytosol | 33.11 | 92.59 |
| AT2G41980.1 | Thale cress | nucleus | 90.4 | 89.51 |
| CDY57244 | Canola | cytosol | 88.08 | 86.36 |
| CDY56244 | Canola | cytosol | 82.12 | 85.81 |
| CDY22549 | Canola | nucleus | 87.75 | 85.76 |
| CDX71977 | Canola | cytosol | 87.75 | 85.48 |
| CDY35390 | Canola | nucleus | 86.75 | 85.34 |
| CDY67927 | Canola | cytosol | 87.75 | 85.21 |
| CDX88968 | Canola | cytosol | 87.42 | 84.89 |
| CDY06056 | Canola | cytosol | 73.18 | 84.35 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 79.47 | 76.19 |
| PGSC0003DMT400060943 | Potato | cytosol | 59.6 | 73.47 |
| PGSC0003DMT400060947 | Potato | cytosol | 59.6 | 73.47 |
| CDY67278 | Canola | cytosol | 18.87 | 70.37 |
| CDY67899 | Canola | cytosol, plastid | 38.41 | 69.88 |
| KRH67087 | Soybean | nucleus | 77.48 | 69.23 |
| KRG95412 | Soybean | nucleus | 77.48 | 68.42 |
| CDX92848 | Canola | nucleus | 65.23 | 64.59 |
| CDX89221 | Canola | nucleus | 67.88 | 63.66 |
| CDY19018 | Canola | nucleus | 67.88 | 63.66 |
| CDX67865 | Canola | nucleus | 67.55 | 63.16 |
| CDY25077 | Canola | nucleus | 67.55 | 63.16 |
| CDY14268 | Canola | nucleus | 66.56 | 62.81 |
| Solyc10g080570.1.1 | Tomato | cytosol | 62.91 | 62.71 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 56.95 | 62.32 |
| CDX97399 | Canola | nucleus | 65.89 | 61.99 |
| CDY43950 | Canola | nucleus | 66.56 | 61.85 |
| CDX89132 | Canola | cytosol | 66.56 | 61.66 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 44.37 | 60.63 |
| CDY38819 | Canola | nucleus | 38.74 | 60.31 |
| CDX75727 | Canola | cytosol | 37.75 | 53.27 |
| CDX82523 | Canola | cytosol | 37.75 | 53.27 |
| CDY11709 | Canola | nucleus | 15.89 | 29.09 |
| CDY10787 | Canola | plastid | 21.85 | 22.84 |
| CDY52473 | Canola | nucleus | 20.53 | 21.83 |
| CDY36209 | Canola | plastid | 15.23 | 21.8 |
| CDX99687 | Canola | nucleus | 20.2 | 21.55 |
| CDY01699 | Canola | nucleus, plastid | 19.87 | 21.28 |
| CDY12498 | Canola | nucleus | 18.21 | 20.22 |
| CDY25763 | Canola | nucleus | 18.21 | 20.22 |
| CDY01695 | Canola | nucleus | 20.53 | 20.06 |
| CDY27008 | Canola | nucleus | 20.86 | 19.15 |
| CDY47873 | Canola | nucleus | 20.53 | 19.14 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 17.55 | 17.85 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.22 | 17.69 |
| CDX96138 | Canola | nucleus | 19.54 | 17.35 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.26 | 17.32 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 19.87 | 17.19 |
| CDY36211 | Canola | nucleus | 20.2 | 16.9 |
| CDY70665 | Canola | nucleus | 17.55 | 16.36 |
| CDY01757 | Canola | cytosol | 1.99 | 11.32 |
| CDY01758 | Canola | cytosol | 12.91 | 8.92 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 |
| InterPro:7-in-absentia-prot_TRAF-dom | GO:A0A078FR58 | UniProt:A0A078FR58 | EnsemblPlants:CDY14808 | ProteinID:CDY14808 | ProteinID:CDY14808.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00084680001 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 | InterPro:SINA-like | SUPFAM:SSF49599 |
| SUPFAM:SSF57850 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EE8664 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | : | : | : | : | : |
Description
BnaC04g48050DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078FR58]
Coordinates
chrLK032047:-:497894..500497
Molecular Weight (calculated)
34513.3 Da
IEP (calculated)
8.144
GRAVY (calculated)
-0.486
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSKKPLESN STGLDYEVKM SKVEANNKPA RSGNASIGKH GLHSSNGVYE LLECLVCTNL MYPPIFQCPN GHTLCSNCKL KVHNTCPTCR YELGNIRCLA
101: LEKVAESLEV PCRFQSLGCH DIFPYYSKLK HEQHCRFRSY NCPYAGSECS VTGDIQTLVD HLKDDHKVDM HDGCTFNHRY VKSNPHEVEN ATWMLTVFNC
201: FGRQFCLHFE AFQLGTAPVY MAFLRLMGDE KEAKKFSYSL EVGAHSRKLT WQGIPRSIRD SHRKVRDSQD GLIIPRNMAL YFSGSDKEEL KLRVTGRIWK
301: EE
101: LEKVAESLEV PCRFQSLGCH DIFPYYSKLK HEQHCRFRSY NCPYAGSECS VTGDIQTLVD HLKDDHKVDM HDGCTFNHRY VKSNPHEVEN ATWMLTVFNC
201: FGRQFCLHFE AFQLGTAPVY MAFLRLMGDE KEAKKFSYSL EVGAHSRKLT WQGIPRSIRD SHRKVRDSQD GLIIPRNMAL YFSGSDKEEL KLRVTGRIWK
301: EE
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.