CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56244	Canola	cytosol	91.61	98.27
CDY57244	Canola	cytosol	97.42	98.05
CDY06056	Canola	cytosol	81.61	96.56
CDY67927	Canola	cytosol	96.13	95.82
AT3G58040.3	Thale cress	cytosol	95.16	95.78
CDX88968	Canola	cytosol	95.81	95.5
CDY06889	Canola	cytosol	85.16	88.89
CDY14808	Canola	cytosol	85.48	87.75
Bra007376.1-P	Field mustard	cytosol	76.45	85.87
CDY22549	Canola	nucleus	85.48	85.76
CDY64066	Canola	cytosol	29.68	85.19
CDY35390	Canola	nucleus	83.55	84.36
VIT_08s0007g06740.t01	Wine grape	cytosol	82.26	80.95
PGSC0003DMT400060947	Potato	cytosol	60.65	76.73
PGSC0003DMT400060943	Potato	cytosol	60.65	76.73
KRH67087	Soybean	nucleus	82.58	75.74
KRG95412	Soybean	nucleus	82.26	74.56
CDY67278	Canola	cytosol	18.06	69.14
CDX92848	Canola	nucleus	67.42	68.52
CDY67899	Canola	cytosol, plastid	36.45	68.07
Solyc10g080570.1.1	Tomato	cytosol	65.81	67.33
CDX89221	Canola	nucleus	69.35	66.77
CDY19018	Canola	nucleus	69.35	66.77
CDY14268	Canola	nucleus	68.71	66.56
CDY25077	Canola	nucleus	68.71	65.94
CDX67865	Canola	nucleus	68.71	65.94
CDX97399	Canola	nucleus	68.06	65.73
CDY14650	Canola	cytosol, nucleus, plastid	46.13	64.71
CDX89132	Canola	cytosol	67.74	64.42
CDY43950	Canola	nucleus	67.42	64.31
CDY67900	Canola	cytosol, endoplasmic reticulum, plastid	56.77	63.77
CDY38819	Canola	nucleus	36.45	58.25
CDX75727	Canola	cytosol	38.06	55.14
CDX82523	Canola	cytosol	37.1	53.74
CDY11709	Canola	nucleus	15.48	29.09
CDY01699	Canola	nucleus, plastid	21.61	23.76
CDY10787	Canola	plastid	21.94	23.53
CDX99687	Canola	nucleus	21.29	23.32
CDY52473	Canola	nucleus	21.29	23.24
CDY01695	Canola	nucleus	21.29	21.36
CDY25763	Canola	nucleus	18.39	20.96
CDY12498	Canola	nucleus	18.39	20.96
CDY27008	Canola	nucleus	21.94	20.67
CDY36209	Canola	plastid	13.87	20.38
CDY47873	Canola	nucleus	21.29	20.37
CDY01756	Canola	cytosol, nucleus, plastid	18.06	18.86
CDX83363	Canola	cytosol, nucleus, plasma membrane	10.65	18.44
CDX95911	Canola	cytosol, nucleus, plastid	17.42	18.37
CDX96138	Canola	nucleus	19.35	17.65
CDY36211	Canola	nucleus	20.32	17.45
CDX96140	Canola	cytosol, nucleus, plastid	19.35	17.19
CDY70665	Canola	nucleus	16.45	15.74
CDY01757	Canola	cytosol	2.26	13.21
CDY01758	Canola	cytosol	13.23	9.38

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10
InterPro:7-in-absentia-prot_TRAF-dom	GO:A0A078C4Y6	EnsemblPlants:CDX71977	ProteinID:CDX71977	ProteinID:CDX71977.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00155746001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniPathway:UPA00143	UniParc:UPI0004EE5538
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

BnaC08g28970D

Coordinates

chrLK031795:-:1596469..1599348

Molecular Weight (calculated)

35072.9 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.485

Length

310 amino acids

Sequence
(BLAST)

001: MAPGGSALKE VLESTSTGMD YEVKIAKAEA NNNNNKPTKS GIAGSGKYGM HSNNGVYELL ECPVCTNLMY PPIHQCPNGH TLCSNCKARV QNTCPTCRYE
101: LGNIRCLALE KVAESLEVPC RYQSLGCHDI FPYYSKLKHE QHCRFRPYAC PYAGSECSVT GDIPTLVVHL KDDHKVDMHD GCTFNHRYVK SNPHEVENAT
201: WMLTVFNCFG RQFCLHFEAF QLGMAPVYMA FLRFMGDENE SKKFSYSLEV GAHGRKLTWQ GIPRSIRDSH RKVRDSQDGL IIPRNLALYF SGGDRQELKL
301: RVTGRIWKEE

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.